Back to Multiple platform build/check report for BioC 3.16:   simplified   long
ABCDEFGHIJKLMN[O]PQRSTUVWXYZ

This page was generated on 2023-04-12 11:06:18 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for OmnipathR on lconway


To the developers/maintainers of the OmnipathR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1393/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OmnipathR 3.6.6  (landing page)
Denes Turei
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/OmnipathR
git_branch: RELEASE_3_16
git_last_commit: 27bb65f
git_last_commit_date: 2023-03-21 11:32:02 -0400 (Tue, 21 Mar 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    TIMEOUT  
palomino4Windows Server 2022 Datacenter / x64  OK    OK    TIMEOUT    OK  
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    TIMEOUT    OK  

Summary

Package: OmnipathR
Version: 3.6.6
Command: rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.6.6.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir
StartedAt: 2023-04-10 23:55:28 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 23:55:47 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 18.3 seconds
RetCode: 0
Status:   OK  
PackageFile: OmnipathR_3.6.6.tgz
PackageFileSize: 3.03 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.6.6.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OmnipathR.buildbin-libdir OmnipathR_3.6.6.tar.gz'
>>>>>>> 

* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2023-04-10 23:55:42] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-04-10 23:55:42] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-04-10 23:55:42] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-04-10 23:55:42] [TRACE]   [OmnipathR] Contains 4 files.
[2023-04-10 23:55:42] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-04-10 23:55:42] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-04-10 23:55:43] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2023-04-10 23:55:43] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2023-04-10 23:55:45] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-04-10 23:55:45] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-04-10 23:55:45] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-04-10 23:55:45] [TRACE]   [OmnipathR] Contains 1 files.
[2023-04-10 23:55:45] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-04-10 23:55:45] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2023-04-10 23:55:45] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2023-04-10 23:55:45] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)