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This page was generated on 2023-03-29 11:05:33 -0400 (Wed, 29 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4482
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4278
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4306
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for FunChIP on palomino4


To the developers/maintainers of the FunChIP package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FunChIP.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 723/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FunChIP 1.24.0  (landing page)
Alice Parodi
Snapshot Date: 2023-03-27 14:00:04 -0400 (Mon, 27 Mar 2023)
git_url: https://git.bioconductor.org/packages/FunChIP
git_branch: RELEASE_3_16
git_last_commit: 88132da
git_last_commit_date: 2022-11-01 11:13:49 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FunChIP
Version: 1.24.0
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL FunChIP
StartedAt: 2023-03-27 16:51:55 -0400 (Mon, 27 Mar 2023)
EndedAt: 2023-03-27 16:52:39 -0400 (Mon, 27 Mar 2023)
EllapsedTime: 44.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL FunChIP
###
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* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'FunChIP' ...
** using staged installation
** libs
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include -I. -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kmean_function.cpp -o kmean_function.o
kmean_function.cpp: In function 'SEXPREC* kmean_function(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
kmean_function.cpp:74:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
   74 |     for (unsigned int i =0 ; i<num_data; i++){
      |                              ~^~~~~~~~~
kmean_function.cpp:80:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
   80 |       for (unsigned int t =0 ; t < num_points; t++)
      |                                ~~^~~~~~~~~~~~
kmean_function.cpp: In function 'SEXPREC* distance_matrix(SEXP, SEXP, SEXP, SEXP, SEXP)':
kmean_function.cpp:210:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  210 |         for (unsigned int i =0 ; i<num_data; i++){
      |                                  ~^~~~~~~~~
kmean_function.cpp:216:40: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  216 |             for (unsigned int t =0 ; t < num_points; t++)
      |                                      ~~^~~~~~~~~~~~
kmean_function.cpp: In function 'void kma_discrete(std::vector<peak>&, const int&, std::vector<int>&, const double&, const double&, const int&, const char&, const double&, const double&, std::vector<int>&, std::vector<double>&, std::vector<int>&, const double&, const double&, int, char, char)':
kmean_function.cpp:638:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<peak>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  638 |   while( iter < iter_max and number_distances_low < dati.size()  and cluster_vuoti==0){  //and number_clusters_different > 0
      |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
kmean_function.cpp:677:52: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
  677 |       if ( (unsigned int)number_clusters_different == dati.size() & iter != 1)
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
kmean_function.cpp:681:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<peak>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  681 |       if (number_distances_low== dati.size())
      |           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
kmean_function.cpp: In function 'void normalize_data(std::vector<int>&, std::vector<int>&, const int&)':
kmean_function.cpp:759:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
  759 |   for (unsigned int i=0; i<n_clust; i++)
      |                          ~^~~~~~~~
In file included from kmean_function.cpp:1:
peak.h: In member function 'std::vector<double> peak::area(int, char) const':
peak.h:154:46: warning: 'D' may be used uninitialized in this function [-Wmaybe-uninitialized]
  154 |                 area_def[0] = sqrt(area[0]/2)/D;
      |                               ~~~~~~~~~~~~~~~^~
g++ -shared -s -static-libgcc -o FunChIP.dll tmp.def kmean_function.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-FunChIP/00new/FunChIP/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FunChIP)