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This page was generated on 2023-04-12 11:05:32 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for EBImage on palomino4


To the developers/maintainers of the EBImage package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBImage.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 588/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EBImage 4.40.1  (landing page)
Andrzej OleÅ›
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/EBImage
git_branch: RELEASE_3_16
git_last_commit: f2b0b41
git_last_commit_date: 2023-04-09 16:52:13 -0400 (Sun, 09 Apr 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  YES
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  YES
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  YES

Summary

Package: EBImage
Version: 4.40.1
Command: rm -rf EBImage.buildbin-libdir && mkdir EBImage.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=EBImage.buildbin-libdir EBImage_4.40.1.tar.gz
StartedAt: 2023-04-11 07:55:57 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 07:56:34 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 37.1 seconds
RetCode: 0
Status:   OK  
PackageFile: EBImage_4.40.1.zip
PackageFileSize: 5.829 MiB

Command output

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###
### Running command:
###
###   rm -rf EBImage.buildbin-libdir && mkdir EBImage.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=EBImage.buildbin-libdir EBImage_4.40.1.tar.gz
###
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* installing *source* package 'EBImage' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c EBImage.c -o EBImage.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c clahe.c -o clahe.o
clahe.c: In function 'CLAHE':
clahe.c:223:19: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
  223 |   uiSubY = uiYSize+1 >> 1; uiYU = uiNrY-1;  uiYB = uiYU;
      |            ~~~~~~~^~
clahe.c:235:23: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
  235 |       uiSubX = uiXSize+1 >> 1;  uiXL = uiNrX - 1; uiXR = uiXL;
      |                ~~~~~~~^~
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c distmap.cpp -o distmap.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c drawCircle.c -o drawCircle.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c floodFill.cpp -o floodFill.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c getFrames.c -o getFrames.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c haralick.c -o haralick.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c medianFilter.c -o medianFilter.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c morphology.cpp -o morphology.o
morphology.cpp: In instantiation of 'void compute_lookup_table_for_line_erode(type***, type*, int, int, chordSet*, PointXY) [with type = int]':
morphology.cpp:253:39:   required from 'void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = int]'
morphology.cpp:340:27:   required from 'void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = int; SEXP = SEXPREC*]'
morphology.cpp:374:79:   required from here
morphology.cpp:196:14: warning: statement has no effect [-Wunused-value]
  196 |         for (i; i < 0; ++i) {
      |              ^
morphology.cpp:199:14: warning: statement has no effect [-Wunused-value]
  199 |         for (i; i < maxX; ++i) {
      |              ^
morphology.cpp:203:14: warning: statement has no effect [-Wunused-value]
  203 |         for (i; i < size.x + set->maxXoffset; ++i) {
      |              ^
morphology.cpp: In instantiation of 'void compute_lookup_table_for_line_dilate(type***, type*, int, int, chordSet*, PointXY) [with type = int]':
morphology.cpp:257:39:   required from 'void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = int]'
morphology.cpp:340:27:   required from 'void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = int; SEXP = SEXPREC*]'
morphology.cpp:374:79:   required from here
morphology.cpp:163:14: warning: statement has no effect [-Wunused-value]
  163 |         for (i; i < 0; ++i) {
      |              ^
morphology.cpp:166:14: warning: statement has no effect [-Wunused-value]
  166 |         for (i; i < maxX; ++i) {
      |              ^
morphology.cpp:170:14: warning: statement has no effect [-Wunused-value]
  170 |         for (i; i < size.x + set->maxXoffset; ++i) {
      |              ^
morphology.cpp: In instantiation of 'void compute_lookup_table_for_line_erode(type***, type*, int, int, chordSet*, PointXY) [with type = double]':
morphology.cpp:253:39:   required from 'void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = double]'
morphology.cpp:340:27:   required from 'void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = double; SEXP = SEXPREC*]'
morphology.cpp:377:76:   required from here
morphology.cpp:196:14: warning: statement has no effect [-Wunused-value]
  196 |         for (i; i < 0; ++i) {
      |              ^
morphology.cpp:199:14: warning: statement has no effect [-Wunused-value]
  199 |         for (i; i < maxX; ++i) {
      |              ^
morphology.cpp:203:14: warning: statement has no effect [-Wunused-value]
  203 |         for (i; i < size.x + set->maxXoffset; ++i) {
      |              ^
morphology.cpp: In instantiation of 'void compute_lookup_table_for_line_dilate(type***, type*, int, int, chordSet*, PointXY) [with type = double]':
morphology.cpp:257:39:   required from 'void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = double]'
morphology.cpp:340:27:   required from 'void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = double; SEXP = SEXPREC*]'
morphology.cpp:377:76:   required from here
morphology.cpp:163:14: warning: statement has no effect [-Wunused-value]
  163 |         for (i; i < 0; ++i) {
      |              ^
morphology.cpp:166:14: warning: statement has no effect [-Wunused-value]
  166 |         for (i; i < maxX; ++i) {
      |              ^
morphology.cpp:170:14: warning: statement has no effect [-Wunused-value]
  170 |         for (i; i < size.x + set->maxXoffset; ++i) {
      |              ^
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c nativeRaster.c -o nativeRaster.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c normalize.c -o normalize.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c objects.c -o objects.o
objects.c: In function 'paintObjects':
objects.c:21:30: warning: unused variable 'dp' [-Wunused-variable]
   21 |     double *obj, *src, *tgt, dp, val;
      |                              ^~
objects.c: In function 'stackObjects':
objects.c:295:10: warning: 'res' may be used uninitialized in this function [-Wmaybe-uninitialized]
  295 |   return res;
      |          ^~~
In file included from objects.h:5,
                 from objects.c:1:
F:/biocbuild/bbs-3.16-bioc/R/include/Rdefines.h:143:28: warning: 'dim' may be used uninitialized in this function [-Wmaybe-uninitialized]
  143 | #define SET_DIM(x, n)      Rf_setAttrib(x, R_DimSymbol, n)
      |                            ^~~~~~~~~~~~
objects.c:192:13: note: 'dim' was declared here
  192 |   SEXP res, dim, xys, img;
      |             ^~~
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c ocontour.c -o ocontour.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c propagate.cpp -o propagate.o
propagate.cpp: In function 'SEXPREC* propagate(SEXP, SEXP, SEXP, SEXP)':
propagate.cpp:174:31: warning: 'mask' may be used uninitialized in this function [-Wmaybe-uninitialized]
  174 |     if (! mask_in[IJ(p.i, p.j)]) continue;
      |                               ^
propagate.cpp:197:8: note: 'mask' was declared here
  197 |   int *mask;
      |        ^~~~
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c spatial.c -o spatial.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c thresh.cpp -o thresh.o
thresh.cpp: In instantiation of 'void _thresh(T*, int*, int, int, int, int, double) [with T = int]':
thresh.cpp:50:76:   required from here
thresh.cpp:64:42: warning: unused variable 'i' [-Wunused-variable]
   64 |     int xi, yi, u, k, l, ou, nu, ov, nv, i;
      |                                          ^
thresh.cpp: In instantiation of 'void _thresh(T*, int*, int, int, int, int, double) [with T = double]':
thresh.cpp:53:76:   required from here
thresh.cpp:64:42: warning: unused variable 'i' [-Wunused-variable]
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tile.cpp -o tile.o
tile.cpp: In function 'SEXPREC* tile(SEXP, SEXP, SEXP)':
tile.cpp:24:17: warning: unused variable 'ims' [-Wunused-variable]
   24 |   SEXP res, dm, ims;
      |                 ^~~
tile.cpp: In function 'SEXPREC* untile(SEXP, SEXP, SEXP)':
tile.cpp:161:29: warning: unused variable 'y' [-Wunused-variable]
  161 |   int nprotect=0, i, j, im, y, iim;
      |                             ^
tile.cpp:162:18: warning: unused variable 'dat' [-Wunused-variable]
  162 |   SEXP res, dim, dat;
      |                  ^~~
tile.cpp:163:11: warning: unused variable 'src' [-Wunused-variable]
  163 |   double *src, *tgt;
      |           ^~~
tile.cpp:163:17: warning: unused variable 'tgt' [-Wunused-variable]
  163 |   double *src, *tgt;
      |                 ^~~
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c tools.c -o tools.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c transpose.cpp -o transpose.o
g++ -std=gnu++14  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c watershed.cpp -o watershed.o
g++ -std=gnu++14 -shared -s -static-libgcc -o EBImage.dll tmp.def EBImage.o clahe.o distmap.o drawCircle.o floodFill.o getFrames.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o transpose.o watershed.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/EBImage.buildbin-libdir/00LOCK-EBImage/00new/EBImage/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'abind' in package 'EBImage'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'EBImage' as EBImage_4.40.1.zip
* DONE (EBImage)