Back to Multiple platform build/check report for BioC 3.15
ABCDEFGHIJKLMNOPQRSTUV[W]XYZ

This page was generated on 2022-10-19 13:21:02 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for waddR on nebbiolo1


To the developers/maintainers of the waddR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/waddR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2114/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waddR 1.10.0  (landing page)
Julian Flesch
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/waddR
git_branch: RELEASE_3_15
git_last_commit: bdeb879
git_last_commit_date: 2022-04-26 12:00:24 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: waddR
Version: 1.10.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL waddR
StartedAt: 2022-10-18 15:25:18 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 15:26:04 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 46.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL waddR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘waddR’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c wasserstein.cpp -o wasserstein.o
wasserstein.cpp: In function ‘std::vector<double> rep_weighted(std::vector<double>, std::vector<int, std::allocator<int> >)’:
wasserstein.cpp:348:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  348 |      for(int i=0; i<x.size(); i++) {
      |                   ~^~~~~~~~~
wasserstein.cpp: In function ‘std::vector<double> concat(std::vector<double>&, std::vector<double>&)’:
wasserstein.cpp:386:27: warning: variable ‘out_it_end’ set but not used [-Wunused-but-set-variable]
  386 |  vector<double>::iterator out_it_end = out.end();
      |                           ^~~~~~~~~~
wasserstein.cpp: In function ‘std::vector<int, std::allocator<int> > interval_table(const std::vector<double>&, const std::vector<double>&, int)’:
wasserstein.cpp:584:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  584 |    while (data_i < datavec.size()) {
      |           ~~~~~~~^~~~~~~~~~~~~~~~
wasserstein.cpp: In function ‘double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)’:
wasserstein.cpp:1088:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1088 |  for (int i=0; i<x.size(); i++) { x[i] = x_[i];}
      |                ~^~~~~~~~~
wasserstein.cpp:1089:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1089 |  for (int j=0; j<y.size(); j++) { y[j] = y_[j];}
      |                ~^~~~~~~~~
wasserstein.cpp: In instantiation of ‘double cor(const std::vector<T>&, const std::vector<T>&, double, double) [with T = double]’:
wasserstein.cpp:716:49:   required from here
wasserstein.cpp:439:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |  for (int i=0; i<x.size(); i++){
wasserstein.cpp: In instantiation of ‘std::vector<T> operator-(const std::vector<T>&, const std::vector<T>&) [with T = double]’:
wasserstein.cpp:778:44:   required from here
wasserstein.cpp:121:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  121 |     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of ‘std::vector<T> cumSum(const std::vector<T>&, int) [with T = double]’:
wasserstein.cpp:884:17:   required from here
wasserstein.cpp:472:47: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  472 |  int upper = ((last_index > 0) && (last_index <= x.size())
      |                                   ~~~~~~~~~~~~^~~~~~~~~~~~
wasserstein.cpp: In instantiation of ‘std::vector<T> operator*(const std::vector<T>&, const std::vector<T>&) [with T = double]’:
wasserstein.cpp:912:62:   required from here
wasserstein.cpp:101:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  101 |     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of ‘std::vector<T> operator+(std::vector<T>, std::vector<T>) [with T = double]’:
wasserstein.cpp:933:15:   required from here
wasserstein.cpp:53:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   53 |   for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of ‘std::vector<T> operator/(const std::vector<T>&, const std::vector<T>&) [with T = double]’:
wasserstein.cpp:1046:15:   required from here
wasserstein.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of ‘std::vector<T> quantile(const std::vector<T>&, std::vector<double>, int) [with T = double]’:
wasserstein.cpp:1162:27:   required from here
wasserstein.cpp:501:4: warning: unused variable ‘max_x’ [-Wunused-variable]
  501 |  T max_x = x_sorted[n-1];
      |    ^~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o waddR.so RcppExports.o wasserstein.o -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.15-bioc/R/library/00LOCK-waddR/00new/waddR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (waddR)