Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-10-19 13:22:17 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for sevenbridges on palomino3


To the developers/maintainers of the sevenbridges package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sevenbridges.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1825/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sevenbridges 1.26.0  (landing page)
Soner Koc
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/sevenbridges
git_branch: RELEASE_3_15
git_last_commit: 845f2c8
git_last_commit_date: 2022-04-26 11:27:03 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: sevenbridges
Version: 1.26.0
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:sevenbridges.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings sevenbridges_1.26.0.tar.gz
StartedAt: 2022-10-19 04:08:53 -0400 (Wed, 19 Oct 2022)
EndedAt: 2022-10-19 04:12:13 -0400 (Wed, 19 Oct 2022)
EllapsedTime: 199.8 seconds
RetCode: 0
Status:   OK  
CheckDir: sevenbridges.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:sevenbridges.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings sevenbridges_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/sevenbridges.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'sevenbridges/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sevenbridges' version '1.26.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sevenbridges' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
Flow        49.18   0.56   49.87
Tool-class  12.35   0.11   12.51
link_what   11.58   0.03   12.72
link         8.83   0.08    9.72
convert_app  5.83   0.07    5.90
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

sevenbridges.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL sevenbridges
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'sevenbridges' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sevenbridges)

Tests output

sevenbridges.Rcheck/tests/testthat.Rout


R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library("testthat")
> library("sevenbridges")
> test_check("sevenbridges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
> 
> proc.time()
   user  system elapsed 
   3.17    0.39    5.12 

Example timings

sevenbridges.Rcheck/sevenbridges-Ex.timings

nameusersystemelapsed
App-class000
Auth-class000
Binding0.040.000.05
CCBList0.020.000.01
CWL000
CommandInputParameter-class0.010.000.02
CommandInputSchema-class0.020.000.01
CommandLineBinding-class000
CommandLineTool000
CommandOutputBinding-class0.020.000.02
CommandOutputParameter-class0.010.000.01
CommandOutputSchema-class000
DSCList0.020.000.02
Enum0.030.000.03
Expression-class0.010.000.01
ExpressionTool-class0.020.000.02
File-class0.060.000.06
Files-class0.020.000.02
Flow49.18 0.5649.87
Metadata0.130.000.13
Parameter0.030.000.03
Process0.060.000.06
ProcessRequirement0.070.000.06
Schema000
TaskHook000
Tool-class12.35 0.1112.51
Workflow0.040.000.05
WorkflowStep0.020.000.01
addIdNum000
api000
as-methods0.060.000.07
batch000
cli_list_projects000
cli_list_tags000
cli_upload000
convert_app5.830.075.90
cwl-utils0.060.040.10
delete-methods000
download-methods000
get_token000
get_uploader000
input_output_matrix0.080.010.09
link8.830.089.72
link_what11.58 0.0312.72
project_details000
project_members000
requirements0.050.000.06
response-methods000
sbg_get_env000
sbg_set_env000
set_test_env000
shorthand-cwl0.030.000.03
tag-methods000
test_tool_bunny000
test_tool_cwlrun000
test_tool_rabix0.00.00.1
upload_complete_all000
upload_complete_part000
upload_delete000
upload_info0.000.000.05
upload_info_part000
upload_init000