Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-10-19 13:22:10 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for rmelting on palomino3


To the developers/maintainers of the rmelting package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rmelting.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1667/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rmelting 1.12.0  (landing page)
J. Aravind
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/rmelting
git_branch: RELEASE_3_15
git_last_commit: 445fded
git_last_commit_date: 2022-04-26 11:53:05 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rmelting
Version: 1.12.0
Command: chmod a+r rmelting -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rmelting
StartedAt: 2022-10-18 20:41:38 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 20:41:52 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 14.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r rmelting -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rmelting
###
##############################################################################
##############################################################################


* checking for file 'rmelting/DESCRIPTION' ... OK
* preparing 'rmelting':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: rmelting
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building 'Tutorial.Rmd' using rmarkdown_notangle

--------------------------------------------------------------------------------
Welcome to rmelting version 1.12.0


# To know how to use this package type:
  browseVignettes(package = 'rmelting')
  for the package vignette.

# To know whats new in this version type:
  news(package='rmelting')
  for the NEWS file.

# To cite the methods in the package type:
  citation(package='rmelting')

# To suppress this message use:
  suppressPackageStartupMessages(library(rmelting))
--------------------------------------------------------------------------------

Quitting from lines 195-197 (Tutorial.Rmd) 
Error: processing vignette 'Tutorial.Rmd' failed with diagnostics:
java.lang.IllegalAccessException: class RJavaTools cannot access a member of class java.util.HashMap$KeySet (in module java.base) with modifiers "public final"
--- failed re-building 'Tutorial.Rmd'

SUMMARY: processing the following file failed:
  'Tutorial.Rmd'

Error: Vignette re-building failed.
Execution halted