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This page was generated on 2022-10-19 13:21:52 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for motifcounter on palomino3


To the developers/maintainers of the motifcounter package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/motifcounter.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1233/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
motifcounter 1.20.0  (landing page)
Wolfgang Kopp
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/motifcounter
git_branch: RELEASE_3_15
git_last_commit: 56e0f21
git_last_commit_date: 2022-04-26 11:39:44 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: motifcounter
Version: 1.20.0
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL motifcounter
StartedAt: 2022-10-18 15:52:31 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 15:53:11 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 39.3 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL motifcounter
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* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'motifcounter' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rbackground.c -o Rbackground.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rcombinatorial.c -o Rcombinatorial.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rcompoundpoisson.c -o Rcompoundpoisson.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rminmaxscore.c -o Rminmaxscore.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Roption.c -o Roption.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Roverlap.c -o Roverlap.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rscore1d.c -o Rscore1d.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rsequence.c -o Rsequence.o
Rsequence.c: In function 'RscoreHistogram':
Rsequence.c:143:21: warning: unused variable 'noscores' [-Wunused-variable]
  143 |     int mins, maxs, noscores;
      |                     ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rsimulate.c -o Rsimulate.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c background.c -o background.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c combinatorial.c -o combinatorial.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c compoundpoisson.c -o compoundpoisson.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c markovchain.c -o markovchain.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c markovchain_single.c -o markovchain_single.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c matrix.c -o matrix.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c mdist_register.c -o mdist_register.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c minmaxscore.c -o minmaxscore.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c overlap.c -o overlap.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c score1d.c -o score1d.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c score2d.c -o score2d.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c scorefunctions.c -o scorefunctions.o
scorefunctions.c: In function 'getPositionWeights':
scorefunctions.c:84:22: warning: unused variable 'cindex' [-Wunused-variable]
   84 |     int j, i, index, cindex, ds;
      |                      ^~~~~~
scorefunctions.c: In function 'hitSequence':
scorefunctions.c:119:17: warning: unused variable 'cindex' [-Wunused-variable]
  119 |   int s, index, cindex;
      |                 ^~~~~~
scorefunctions.c: In function 'scoreSequence':
scorefunctions.c:159:19: warning: unused variable 'cindex' [-Wunused-variable]
  159 |     int s, index, cindex;
      |                   ^~~~~~
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sequence.c -o sequence.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c simulate.c -o simulate.o
gcc -shared -s -static-libgcc -o motifcounter.dll tmp.def Rbackground.o Rcombinatorial.o Rcompoundpoisson.o Rminmaxscore.o Roption.o Roverlap.o Rscore1d.o Rsequence.o Rsimulate.o background.o combinatorial.o compoundpoisson.o markovchain.o markovchain_single.o matrix.o mdist_register.o minmaxscore.o overlap.o score1d.o score2d.o scorefunctions.o sequence.o simulate.o -fopenmp -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-motifcounter/00new/motifcounter/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (motifcounter)