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This page was generated on 2022-10-19 13:23:14 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for metabomxtr on merida1


To the developers/maintainers of the metabomxtr package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabomxtr.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1123/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabomxtr 1.30.0  (landing page)
Michael Nodzenski
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/metabomxtr
git_branch: RELEASE_3_15
git_last_commit: 0338653
git_last_commit_date: 2022-04-26 11:20:48 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: metabomxtr
Version: 1.30.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:metabomxtr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings metabomxtr_1.30.0.tar.gz
StartedAt: 2022-10-19 04:24:44 -0400 (Wed, 19 Oct 2022)
EndedAt: 2022-10-19 04:27:10 -0400 (Wed, 19 Oct 2022)
EllapsedTime: 145.6 seconds
RetCode: 0
Status:   OK  
CheckDir: metabomxtr.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:metabomxtr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings metabomxtr_1.30.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/metabomxtr.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘metabomxtr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metabomxtr’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘metabomxtr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
mxtrmod            6.876  4.505   5.155
metabomxtr-package 5.566  3.055   4.469
metabplot          4.943  2.652   2.883
mixnorm            3.248  2.477   1.706
mxtrmodLRT         3.162  2.478   2.813
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

metabomxtr.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL metabomxtr
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
* installing *source* package ‘metabomxtr’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metabomxtr)

Tests output


Example timings

metabomxtr.Rcheck/metabomxtr-Ex.timings

nameusersystemelapsed
addBatchMeans0.0480.0060.054
addOutlierInfo0.0010.0010.002
allMissingLevels0.0060.0020.008
anyMissingLevels0.0030.0020.005
idMissingLevels0.0050.0010.007
metabomxtr-package5.5663.0554.469
metabplot4.9432.6522.883
mixnorm3.2482.4771.706
mxtrmod6.8764.5055.155
mxtrmodLL0.0050.0030.007
mxtrmodLRT3.1622.4782.813
mxtrmodstart0.0040.0020.007
removeAllMissingCatVar0.0050.0010.006
removeMissingLevels0.0050.0030.009
runMxtrmod1.4800.1341.615