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This page was generated on 2022-10-19 13:21:46 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for matter on palomino3


To the developers/maintainers of the matter package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/matter.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1087/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
matter 1.22.0  (landing page)
Kylie A. Bemis
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/matter
git_branch: RELEASE_3_15
git_last_commit: dac398c
git_last_commit_date: 2022-04-26 11:36:34 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: matter
Version: 1.22.0
Command: rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=matter.buildbin-libdir matter_1.22.0.tar.gz
StartedAt: 2022-10-19 06:07:07 -0400 (Wed, 19 Oct 2022)
EndedAt: 2022-10-19 06:08:23 -0400 (Wed, 19 Oct 2022)
EllapsedTime: 76.1 seconds
RetCode: 0
Status:   OK  
PackageFile: matter_1.22.0.zip
PackageFileSize: 3.671 MiB

Command output

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###
### Running command:
###
###   rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=matter.buildbin-libdir matter_1.22.0.tar.gz
###
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* installing *source* package 'matter' ...
** using staged installation
** libs
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c altrep.cpp -o altrep.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bsearch.cpp -o bsearch.o
bsearch.cpp: In function 'size_t binary_search(T, SEXP, size_t, size_t, double, int, int, bool) [with T = const char*]':
bsearch.cpp:51:36: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
   51 |   else if ( mid == right && result > 0 )
      |                             ~~~~~~~^~~
bsearch.cpp: In function 'size_t binary_search(T, SEXP, size_t, size_t, double, int, int, bool) [with T = double]':
bsearch.cpp:136:27: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
  136 |   else if ( (mid == right && diff > 0) && (nearest || dright < tol) )
      |             ~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.cpp -o init.o
In file included from init.cpp:5:
altrep.h:20:25: warning: 'MatterAlt_string' defined but not used [-Wunused-variable]
   20 | static R_altrep_class_t MatterAlt_string;
      |                         ^~~~~~~~~~~~~~~~
altrep.h:19:25: warning: 'MatterAlt_real' defined but not used [-Wunused-variable]
   19 | static R_altrep_class_t MatterAlt_real;
      |                         ^~~~~~~~~~~~~~
altrep.h:18:25: warning: 'MatterAlt_integer' defined but not used [-Wunused-variable]
   18 | static R_altrep_class_t MatterAlt_integer;
      |                         ^~~~~~~~~~~~~~~~~
altrep.h:17:25: warning: 'MatterAlt_logical' defined but not used [-Wunused-variable]
   17 | static R_altrep_class_t MatterAlt_logical;
      |                         ^~~~~~~~~~~~~~~~~
altrep.h:16:25: warning: 'MatterAlt_raw' defined but not used [-Wunused-variable]
   16 | static R_altrep_class_t MatterAlt_raw;
      |                         ^~~~~~~~~~~~~
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matter.cpp -o matter.o
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = double]':
matter.cpp:3409:33: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
 3409 |                         add<T,T>(x, y, i, atm, 0, count, skip);
      |                         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = int]':
matter.cpp:3409:33: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
 3409 |                         add<T,T>(x, y, i, atm, 0, count, skip);
      |                         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = unsigned char]':
matter.cpp:1147:28: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1147 |                     tmp = y[atm->group()];
      |                           ~^
matter.cpp:3389:13: note: 'y' was declared here
 3389 |         T * y;
      |             ^
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c vectools.cpp -o vectools.o
g++ -std=gnu++11 -shared -s -static-libgcc -o matter.dll tmp.def altrep.o bsearch.o init.o matter.o utils.o vectools.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/meat/matter.buildbin-libdir/00LOCK-matter/00new/matter/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'apply' in package 'matter'
Creating a new generic function for 'scale' in package 'matter'
Creating a new generic function for 'biglm' in package 'matter'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'matter' as matter_1.22.0.zip
* DONE (matter)