Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:21 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the graper package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 841/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
graper 1.12.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: graper |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings graper_1.12.0.tar.gz |
StartedAt: 2022-10-18 20:00:47 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 20:01:39 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 51.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: graper.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings graper_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/graper.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘graper/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘graper’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘graper’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.15-bioc/meat/graper.Rcheck/00check.log’ for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘graper’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c fit_graper.cpp -o fit_graper.o In file included from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/lexical_cast.hpp:30, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/math/tools/lexical_cast.hpp:12, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/math/tools/convert_from_string.hpp:14, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/math/constants/constants.hpp:14, from /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:20, from graper_linear_dense_ff.h:2, from fit_graper.cpp:4: /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^ /home/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_<Pred>::************ | ^ g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -L/home/biocbuild/bbs-3.15-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.15-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.15-bioc/R/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(graper) > > test_check("graper") iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-839.093 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-556.928 ELB improved by 282.165 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-501.674 ELB improved by 55.2538 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-470.014 ELB improved by 31.6595 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-457.347 ELB improved by 12.6669 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-451.94 ELB improved by 5.40787 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-448.537 ELB improved by 3.40207 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-445.587 ELB improved by 2.95037 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-442.72 ELB improved by 2.86738 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-439.804 ELB improved by 2.91545 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-436.822 ELB improved by 2.98228 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-433.884 ELB improved by 2.93797 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-431.216 ELB improved by 2.66841 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.035 ELB improved by 2.18075 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.409 ELB improved by 1.62599 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.243 ELB improved by 1.16569 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-425.386 ELB improved by 0.856808 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.713 ELB improved by 0.673222 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.142 ELB improved by 0.57101 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-423.624 ELB improved by 0.518114 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-423.128 ELB improved by 0.495966 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.633 ELB improved by 0.494755 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.123 ELB improved by 0.509932 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.583 ELB improved by 0.540226 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.997 ELB improved by 0.586196 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.348 ELB improved by 0.648576 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.621 ELB improved by 0.727075 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.799 ELB improved by 0.822623 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.855 ELB improved by 0.943187 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.753 ELB improved by 1.10216 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.454 ELB improved by 1.29952 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.945 ELB improved by 1.50908 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.252 ELB improved by 1.69271 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.456 ELB improved by 1.79647 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.694 ELB improved by 1.76134 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.118 ELB improved by 1.57598 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-405.822 ELB improved by 1.29601 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-404.815 ELB improved by 1.00672 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-404.046 ELB improved by 0.769296 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.453 ELB improved by 0.593123 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.996 ELB improved by 0.457322 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.643 ELB improved by 0.352901 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.359 ELB improved by 0.283874 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.108 ELB improved by 0.251348 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.853 ELB improved by 0.255008 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.565 ELB improved by 0.287257 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.265 ELB improved by 0.300674 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.025 ELB improved by 0.239724 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.872 ELB improved by 0.152467 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.777 ELB improved by 0.095691 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.711 ELB improved by 0.0659472 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.661 ELB improved by 0.0495568 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.622 ELB improved by 0.0394895 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.589 ELB improved by 0.0327139 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.561 ELB improved by 0.027833 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.537 ELB improved by 0.0241337 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.516 ELB improved by 0.0212196 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.497 ELB improved by 0.0188552 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.48 ELB improved by 0.0168929 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.465 ELB improved by 0.0152355 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.451 ELB improved by 0.0138167 iteration 62 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.438 ELB improved by 0.0125895 iteration 63 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.427 ELB improved by 0.0115194 iteration 64 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.416 ELB improved by 0.0105802 iteration 65 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.407 ELB improved by 0.00975164 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-904.682 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-568.651 ELB improved by 336.031 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-507.993 ELB improved by 60.6571 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-471.531 ELB improved by 36.462 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-457.007 ELB improved by 14.5246 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-451.003 ELB improved by 6.004 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-447.091 ELB improved by 3.91213 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-443.937 ELB improved by 3.15341 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-441.058 ELB improved by 2.87887 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.225 ELB improved by 2.83308 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-435.338 ELB improved by 2.88745 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-432.36 ELB improved by 2.9776 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.296 ELB improved by 3.06411 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.186 ELB improved by 3.11055 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-423.118 ELB improved by 3.06809 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.232 ELB improved by 2.88592 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.673 ELB improved by 2.55836 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.539 ELB improved by 2.13465 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.856 ELB improved by 1.6824 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.583 ELB improved by 1.27286 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.64 ELB improved by 0.943256 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.944 ELB improved by 0.695682 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.424 ELB improved by 0.52025 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.024 ELB improved by 0.400579 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.705 ELB improved by 0.318817 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.444 ELB improved by 0.261081 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.225 ELB improved by 0.218486 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.04 ELB improved by 0.185772 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.88 ELB improved by 0.159838 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.741 ELB improved by 0.138783 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.619 ELB improved by 0.121381 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.513 ELB improved by 0.106798 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.418 ELB improved by 0.0944401 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.334 ELB improved by 0.0838706 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.26 ELB improved by 0.0747603 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.193 ELB improved by 0.0668564 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.133 ELB improved by 0.0599621 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.079 ELB improved by 0.0539217 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.03 ELB improved by 0.0486109 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.986 ELB improved by 0.0439282 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.947 ELB improved by 0.0397896 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.91 ELB improved by 0.0361243 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.878 ELB improved by 0.0328721 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.848 ELB improved by 0.0299812 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.82 ELB improved by 0.0274065 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.795 ELB improved by 0.0251092 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.772 ELB improved by 0.0230551 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.751 ELB improved by 0.021215 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.731 ELB improved by 0.0195631 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.713 ELB improved by 0.0180773 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.696 ELB improved by 0.0167383 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.681 ELB improved by 0.0155291 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.666 ELB improved by 0.0144353 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.653 ELB improved by 0.0134441 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.64 ELB improved by 0.0125442 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.629 ELB improved by 0.011726 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.618 ELB improved by 0.0109808 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.607 ELB improved by 0.0103011 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.598 ELB improved by 0.00968032 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-874.414 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-564.309 ELB improved by 310.105 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-504.243 ELB improved by 60.0665 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-467.41 ELB improved by 36.833 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-451.424 ELB improved by 15.9861 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-443.819 ELB improved by 7.60469 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.829 ELB improved by 5.99033 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-431.666 ELB improved by 6.1621 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.693 ELB improved by 6.97378 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.881 ELB improved by 7.81171 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.964 ELB improved by 7.9168 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.017 ELB improved by 6.94685 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-396.569 ELB improved by 5.44839 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-392.528 ELB improved by 4.04091 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-389.644 ELB improved by 2.88376 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-387.577 ELB improved by 2.06683 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-386.045 ELB improved by 1.53248 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-384.871 ELB improved by 1.17376 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.893 ELB improved by 0.977874 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-383.005 ELB improved by 0.888114 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-382.211 ELB improved by 0.793923 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-381.515 ELB improved by 0.69591 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-380.908 ELB improved by 0.607668 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-380.414 ELB improved by 0.493387 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-380.035 ELB improved by 0.37896 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-379.74 ELB improved by 0.295251 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-379.501 ELB improved by 0.239577 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-379.299 ELB improved by 0.201063 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-379.127 ELB improved by 0.17242 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.977 ELB improved by 0.149805 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.846 ELB improved by 0.131217 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.73 ELB improved by 0.115535 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.628 ELB improved by 0.102078 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.538 ELB improved by 0.0904087 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.458 ELB improved by 0.0802336 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.386 ELB improved by 0.0713419 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.323 ELB improved by 0.0635706 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.266 ELB improved by 0.0567826 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.215 ELB improved by 0.0508553 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.17 ELB improved by 0.045677 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.128 ELB improved by 0.0411463 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.091 ELB improved by 0.0371729 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.058 ELB improved by 0.0336781 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-378.027 ELB improved by 0.0305942 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.999 ELB improved by 0.0278638 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.974 ELB improved by 0.0254385 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.95 ELB improved by 0.0232775 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.929 ELB improved by 0.0213466 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.909 ELB improved by 0.0196166 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.891 ELB improved by 0.0180629 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.875 ELB improved by 0.0166643 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.859 ELB improved by 0.0154027 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.845 ELB improved by 0.0142625 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.832 ELB improved by 0.01323 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.819 ELB improved by 0.0122935 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.808 ELB improved by 0.0114427 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.797 ELB improved by 0.0106684 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-377.787 ELB improved by 0.00996263 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-864.547 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-593.352 ELB improved by 271.195 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-537.453 ELB improved by 55.8987 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-494.332 ELB improved by 43.1219 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-470.25 ELB improved by 24.0814 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-460.733 ELB improved by 9.51689 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-455.911 ELB improved by 4.82226 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-452.09 ELB improved by 3.82083 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-448.521 ELB improved by 3.56964 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-445.039 ELB improved by 3.4814 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-441.718 ELB improved by 3.321 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.757 ELB improved by 2.96079 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-436.351 ELB improved by 2.40588 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-434.557 ELB improved by 1.79445 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-433.279 ELB improved by 1.27791 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-432.362 ELB improved by 0.916939 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-431.671 ELB improved by 0.691452 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-431.116 ELB improved by 0.554916 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-430.649 ELB improved by 0.467166 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-430.245 ELB improved by 0.403561 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.892 ELB improved by 0.353159 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.579 ELB improved by 0.312442 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.3 ELB improved by 0.279156 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.051 ELB improved by 0.249801 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.83 ELB improved by 0.220905 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.638 ELB improved by 0.191304 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.476 ELB improved by 0.162581 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.338 ELB improved by 0.137235 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.222 ELB improved by 0.116675 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.121 ELB improved by 0.100771 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.032 ELB improved by 0.0885603 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.953 ELB improved by 0.0789906 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.882 ELB improved by 0.0712461 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.817 ELB improved by 0.0647814 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.758 ELB improved by 0.0592517 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.704 ELB improved by 0.0544392 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.654 ELB improved by 0.0502004 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.607 ELB improved by 0.0464357 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.564 ELB improved by 0.0430716 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.524 ELB improved by 0.0400508 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.487 ELB improved by 0.0373273 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.452 ELB improved by 0.0348628 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.419 ELB improved by 0.0326252 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.389 ELB improved by 0.0305871 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.36 ELB improved by 0.0287247 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.333 ELB improved by 0.027018 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.307 ELB improved by 0.0254493 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.283 ELB improved by 0.0240034 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.261 ELB improved by 0.0226673 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.239 ELB improved by 0.0214294 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.219 ELB improved by 0.0202799 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.2 ELB improved by 0.0192102 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.182 ELB improved by 0.0182127 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.164 ELB improved by 0.0172808 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.148 ELB improved by 0.0164088 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.132 ELB improved by 0.0155915 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.117 ELB improved by 0.0148246 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.103 ELB improved by 0.014104 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.09 ELB improved by 0.0134261 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.077 ELB improved by 0.0127879 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.065 ELB improved by 0.0121865 iteration 62 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.053 ELB improved by 0.0116193 iteration 63 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.042 ELB improved by 0.011084 iteration 64 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.032 ELB improved by 0.0105786 iteration 65 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.022 ELB improved by 0.010101 iteration 66 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.012 ELB improved by 0.00964955 ELB converged [ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ] > > proc.time() user system elapsed 2.385 0.168 2.535
graper.Rcheck/graper-Ex.timings
name | user | system | elapsed | |
coef.graper | 0.042 | 0.019 | 0.064 | |
getPIPs | 0.046 | 0.011 | 0.057 | |
graper | 0.071 | 0.024 | 0.095 | |
makeExampleData | 0.005 | 0.004 | 0.010 | |
makeExampleDataWithUnequalGroups | 0.011 | 0.000 | 0.011 | |
plotELBO | 0.186 | 0.028 | 0.215 | |
plotGroupPenalties | 0.718 | 0.044 | 0.763 | |
plotPosterior | 0.478 | 0.036 | 0.515 | |
predict.graper | 1.945 | 0.088 | 2.033 | |
print.graper | 0.049 | 0.020 | 0.070 | |