Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:20 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the decoupleR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/decoupleR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 474/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
decoupleR 2.1.6 (landing page) Pau Badia-i-Mompel
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: decoupleR |
Version: 2.1.6 |
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:decoupleR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings decoupleR_2.1.6.tar.gz |
StartedAt: 2022-03-17 18:53:29 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 18:56:03 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 154.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: decoupleR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:decoupleR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings decoupleR_2.1.6.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/decoupleR.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'decoupleR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'decoupleR' version '2.1.6' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'decoupleR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'RobustRankAggreg' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed run_aucell 5.91 0.48 6.39 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/decoupleR.Rcheck/00check.log' for details.
decoupleR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL decoupleR ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'decoupleR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'decoupleR' finding HTML links ... done check_corr html convert_f_defaults html decouple html decoupleR-package html dot-decoupler_mat_format html dot-decoupler_network_format html dot-fit_preprocessing html extract_sets html filt_minsize html get_profile_of html get_toy_data html intersect_regulons html pipe html pivot_wider_profile html randomize_matrix html rename_net html run_aucell html run_consensus html run_fgsea html run_gsva html run_mdt html run_mlm html run_ora html run_udt html run_ulm html run_viper html run_wmean html run_wsum html show_methods html tidyeval html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (decoupleR) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'ngsReports' is missing or broken done
decoupleR.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(decoupleR) > > test_check("decoupleR") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ] > > proc.time() user system elapsed 62.51 3.14 65.39
decoupleR.Rcheck/decoupleR-Ex.timings
name | user | system | elapsed | |
check_corr | 0.1 | 0.0 | 0.1 | |
convert_f_defaults | 0.07 | 0.02 | 0.08 | |
decouple | 0 | 0 | 0 | |
dot-fit_preprocessing | 0.44 | 0.48 | 0.92 | |
extract_sets | 0.05 | 0.00 | 0.05 | |
filt_minsize | 0.08 | 0.00 | 0.08 | |
get_profile_of | 0 | 0 | 0 | |
get_toy_data | 0.01 | 0.00 | 0.01 | |
intersect_regulons | 0.05 | 0.00 | 0.05 | |
pipe | 0 | 0 | 0 | |
pivot_wider_profile | 0 | 0 | 0 | |
randomize_matrix | 0 | 0 | 0 | |
rename_net | 0.05 | 0.02 | 0.07 | |
run_aucell | 5.91 | 0.48 | 6.39 | |
run_consensus | 3.0 | 0.2 | 3.2 | |
run_fgsea | 1.61 | 0.10 | 1.70 | |
run_gsva | 1.42 | 0.07 | 1.50 | |
run_mdt | 0.37 | 0.02 | 0.28 | |
run_mlm | 0.16 | 0.00 | 0.16 | |
run_ora | 0.41 | 0.00 | 0.41 | |
run_udt | 0.39 | 0.02 | 0.40 | |
run_ulm | 0.25 | 0.00 | 0.25 | |
run_viper | 0.61 | 0.04 | 0.66 | |
run_wmean | 1.09 | 0.02 | 1.11 | |
run_wsum | 0.97 | 0.00 | 0.97 | |
show_methods | 0.03 | 0.00 | 0.03 | |
tidyeval | 0 | 0 | 0 | |