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This page was generated on 2022-10-19 13:20:55 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for SpidermiR on nebbiolo1


To the developers/maintainers of the SpidermiR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpidermiR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1905/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpidermiR 1.26.1  (landing page)
Claudia Cava
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/SpidermiR
git_branch: RELEASE_3_15
git_last_commit: 8ffa688
git_last_commit_date: 2022-10-10 12:09:32 -0400 (Mon, 10 Oct 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SpidermiR
Version: 1.26.1
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:SpidermiR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings SpidermiR_1.26.1.tar.gz
StartedAt: 2022-10-18 21:58:05 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 22:00:27 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 142.0 seconds
RetCode: 0
Status:   OK  
CheckDir: SpidermiR.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:SpidermiR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings SpidermiR_1.26.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/SpidermiR.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SpidermiR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SpidermiR’ version ‘1.26.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpidermiR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘gdata’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
SpidermiRdownload_miRNAprediction 3.564  0.929   5.163
SpidermiRdownload_drug_gene       1.767  0.407   7.842
SpidermiRquery_disease            0.966  0.041  37.507
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-bioc/meat/SpidermiR.Rcheck/00check.log’
for details.



Installation output

SpidermiR.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL SpidermiR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘SpidermiR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpidermiR)

Tests output


Example timings

SpidermiR.Rcheck/SpidermiR-Ex.timings

nameusersystemelapsed
SpidermiRanalyze_degree_centrality0.0030.0000.003
SpidermiRanalyze_direct_net0.0030.0000.003
SpidermiRanalyze_direct_subnetwork0.0010.0040.005
SpidermiRanalyze_subnetwork_neigh0.0030.0000.003
SpidermiRdownload_drug_gene1.7670.4077.842
SpidermiRdownload_miRNAprediction3.5640.9295.163
SpidermiRdownload_net0.1710.0091.082
SpidermiRprepare_NET0.5060.0371.400
SpidermiRquery_disease 0.966 0.04137.507
SpidermiRquery_networks_type0.0260.0030.557
SpidermiRquery_spec_networks0.0470.0000.429
SpidermiRquery_species0.0190.0000.274