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This page was generated on 2022-10-19 13:22:16 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for SeqArray on palomino3


To the developers/maintainers of the SeqArray package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SeqArray.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1810/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.36.3  (landing page)
Xiuwen Zheng
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/SeqArray
git_branch: RELEASE_3_15
git_last_commit: 7378309
git_last_commit_date: 2022-09-01 05:29:33 -0400 (Thu, 01 Sep 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SeqArray
Version: 1.36.3
Command: rm -rf SeqArray.buildbin-libdir && mkdir SeqArray.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SeqArray.buildbin-libdir SeqArray_1.36.3.tar.gz
StartedAt: 2022-10-19 06:34:20 -0400 (Wed, 19 Oct 2022)
EndedAt: 2022-10-19 06:35:23 -0400 (Wed, 19 Oct 2022)
EllapsedTime: 63.2 seconds
RetCode: 0
Status:   OK  
PackageFile: SeqArray_1.36.3.zip
PackageFileSize: 3.451 MiB

Command output

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###
### Running command:
###
###   rm -rf SeqArray.buildbin-libdir && mkdir SeqArray.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SeqArray.buildbin-libdir SeqArray_1.36.3.tar.gz
###
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* installing *source* package 'SeqArray' ...
** using staged installation
** libs
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ConvToGDS.cpp -o ConvToGDS.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FileMerge.cpp -o FileMerge.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GetData.cpp -o GetData.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Index.cpp -o Index.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LinkSNPRelate.cpp -o LinkSNPRelate.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Methods.cpp -o Methods.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c R_SeqArray.c -o R_SeqArray.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBySample.cpp -o ReadBySample.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadByUnit.cpp -o ReadByUnit.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadByVariant.cpp -o ReadByVariant.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SeqArray.cpp -o SeqArray.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pkg_test.cpp -o pkg_test.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c samtools_ext.c -o samtools_ext.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -DUSING_R -I'F:/biocbuild/bbs-3.15-bioc/R/library/gdsfmt/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c vectorization.c -o vectorization.o
g++ -std=gnu++11 -shared -s -static-libgcc -o SeqArray.dll tmp.def ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByUnit.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/meat/SeqArray.buildbin-libdir/00LOCK-SeqArray/00new/SeqArray/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SeqArray' as SeqArray_1.36.3.zip
* DONE (SeqArray)