Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-10-19 13:22:12 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for RTCGAToolbox on palomino3


To the developers/maintainers of the RTCGAToolbox package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RTCGAToolbox.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1716/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTCGAToolbox 2.26.1  (landing page)
Marcel Ramos
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/RTCGAToolbox
git_branch: RELEASE_3_15
git_last_commit: bd76ae2
git_last_commit_date: 2022-10-11 15:28:53 -0400 (Tue, 11 Oct 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: RTCGAToolbox
Version: 2.26.1
Command: chmod a+r RTCGAToolbox -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RTCGAToolbox
StartedAt: 2022-10-18 20:48:15 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 20:49:03 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 47.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r RTCGAToolbox -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RTCGAToolbox
###
##############################################################################
##############################################################################


* checking for file 'RTCGAToolbox/DESCRIPTION' ... OK
* preparing 'RTCGAToolbox':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'RTCGAToolbox-vignette.Rmd' using rmarkdown
Quitting from lines 131-134 (RTCGAToolbox-vignette.Rmd) 
Error: processing vignette 'RTCGAToolbox-vignette.Rmd' failed with diagnostics:
failed to load external entity "http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/READ/20160128/"

--- failed re-building 'RTCGAToolbox-vignette.Rmd'

SUMMARY: processing the following file failed:
  'RTCGAToolbox-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted