Denes Turei
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/OmnipathR |
| git_branch: RELEASE_3_15 |
| git_last_commit: fd6742c |
| git_last_commit_date: 2022-10-15 12:41:33 -0400 (Sat, 15 Oct 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:21:57 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OmnipathR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1366/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.4.7 (landing page) Denes Turei
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| Package: OmnipathR |
| Version: 3.4.7 |
| Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:OmnipathR.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings OmnipathR_3.4.7.tar.gz |
| StartedAt: 2022-10-19 02:32:48 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 02:56:27 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 1418.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OmnipathR.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:OmnipathR.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings OmnipathR_3.4.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/OmnipathR.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'OmnipathR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OmnipathR' version '3.4.7'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OmnipathR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'rmarkdown'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[2022-10-19 02:33:23] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-10-19 02:33:23] [TRACE] [OmnipathR] Running on a build server, wiping cache.
[2022-10-19 02:33:23] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-10-19 02:33:24] [TRACE] [OmnipathR] Pandoc version: `2.7.3`.
[2022-10-19 02:33:24] [TRACE] [OmnipathR] Cache locked: FALSE
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
nichenet_lr_network 161.09 0.74 163.45
nichenet_networks 67.13 0.58 68.89
filter_intercell_network 64.99 1.57 74.67
simplify_intercell_network 58.19 0.69 61.86
evex_download 58.03 0.84 75.00
nichenet_gr_network_evex 57.24 0.77 58.30
unique_intercell_network 54.85 0.28 55.14
nichenet_signaling_network 37.95 1.48 46.21
nichenet_lr_network_omnipath 37.33 1.17 45.16
annotation_categories 32.28 0.10 33.53
pivot_annotations 25.35 1.44 29.18
bioplex_all 23.72 0.75 25.43
consensuspathdb_raw_table 21.73 1.19 22.88
curated_ligrec_stats 20.11 2.45 84.05
go_annot_download 15.27 1.29 33.68
filter_intercell 12.95 0.68 13.65
nichenet_gr_network_pathwaycommons 9.27 0.61 9.78
filter_extra_attrs 9.80 0.07 10.44
nichenet_gr_network_omnipath 8.86 0.26 10.11
pathwaycommons_download 7.67 0.66 8.19
nichenet_signaling_network_evex 7.78 0.45 8.75
ancestors 7.28 0.53 12.30
preppi_filter 6.76 0.79 6.21
extra_attr_values 7.11 0.22 10.82
preppi_download 6.39 0.93 8.04
extra_attrs_to_cols 6.86 0.07 6.94
nichenet_gr_network 6.31 0.45 7.91
with_extra_attrs 5.75 0.22 7.11
import_intercell_network 4.96 0.57 8.70
curated_ligand_receptor_interactions 4.77 0.67 15.25
nichenet_signaling_network_omnipath 5.23 0.04 5.28
giant_component 4.92 0.26 6.40
kegg_pathway_download 3.44 0.10 21.86
print_interactions 2.40 0.19 5.71
import_transcriptional_interactions 1.67 0.20 9.54
nichenet_gr_network_trrust 1.61 0.03 6.38
all_uniprots 1.52 0.09 14.61
uniprot_full_id_mapping_table 1.21 0.05 13.32
translate_ids 1.16 0.08 13.13
trrust_download 0.95 0.01 5.59
import_omnipath_intercell 0.65 0.17 6.17
uniprot_id_mapping_table 0.54 0.02 5.86
remap_dorothea_download 0.30 0.03 5.58
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'F:/biocbuild/bbs-3.15-bioc/meat/OmnipathR.Rcheck/00check.log'
for details.
OmnipathR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL OmnipathR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'OmnipathR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2022-10-18 16:21:13] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-10-18 16:21:13] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-10-18 16:21:13] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-10-18 16:21:13] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2022-10-18 16:21:13] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2022-10-18 16:21:15] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-10-18 16:21:15] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-10-18 16:21:15] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-10-18 16:21:15] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2022-10-18 16:21:15] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)
OmnipathR.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #!/usr/bin/env Rscript
>
> #
> # This file is part of the `OmnipathR` R package
> #
> # Copyright
> # 2018-2022
> # Saez Lab, Uniklinik RWTH Aachen, Heidelberg University
> #
> # File author(s): Alberto Valdeolivas
> # Dénes Türei (turei.denes@gmail.com)
> # Attila Gábor
> #
> # Distributed under the MIT (Expat) License.
> # See accompanying file `LICENSE` or find a copy at
> # https://directory.fsf.org/wiki/License:Expat
> #
> # Website: https://saezlab.github.io/omnipathr
> # Git repo: https://github.com/saezlab/OmnipathR
> #
>
>
> library(testthat)
> library(OmnipathR)
[2022-10-19 02:55:34] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-10-19 02:55:34] [TRACE] [OmnipathR] Running on a build server, wiping cache.
[2022-10-19 02:55:34] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-10-19 02:55:34] [TRACE] [OmnipathR] Pandoc version: `2.7.3`.
[2022-10-19 02:55:34] [TRACE] [OmnipathR] Cache locked: FALSE
>
> test_check('OmnipathR')
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
>
> proc.time()
user system elapsed
10.34 1.71 36.79
OmnipathR.Rcheck/OmnipathR-Ex.timings
| name | user | system | elapsed | |
| OmnipathR | 0 | 0 | 0 | |
| all_uniprots | 1.52 | 0.09 | 14.61 | |
| ancestors | 7.28 | 0.53 | 12.30 | |
| annotated_network | 0.39 | 0.17 | 3.72 | |
| annotation_categories | 32.28 | 0.10 | 33.53 | |
| bioplex1 | 1.48 | 0.17 | 2.09 | |
| bioplex2 | 1.50 | 0.14 | 2.74 | |
| bioplex3 | 2.74 | 0.26 | 4.76 | |
| bioplex_all | 23.72 | 0.75 | 25.43 | |
| bioplex_hct116_1 | 0.18 | 0.00 | 0.18 | |
| bma_motif_es | 0.22 | 0.10 | 1.55 | |
| bma_motif_vs | 0.17 | 0.00 | 0.71 | |
| consensuspathdb_download | 0 | 0 | 0 | |
| consensuspathdb_raw_table | 21.73 | 1.19 | 22.88 | |
| curated_ligand_receptor_interactions | 4.77 | 0.67 | 15.25 | |
| curated_ligrec_stats | 20.11 | 2.45 | 84.05 | |
| descendants | 0.69 | 0.00 | 0.68 | |
| enzsub_graph | 1.31 | 0.13 | 4.21 | |
| evex_download | 58.03 | 0.84 | 75.00 | |
| extra_attr_values | 7.11 | 0.22 | 10.82 | |
| extra_attrs | 4.00 | 0.05 | 4.05 | |
| extra_attrs_to_cols | 6.86 | 0.07 | 6.94 | |
| filter_by_resource | 3.19 | 0.21 | 4.95 | |
| filter_extra_attrs | 9.80 | 0.07 | 10.44 | |
| filter_intercell | 12.95 | 0.68 | 13.65 | |
| filter_intercell_network | 64.99 | 1.57 | 74.67 | |
| find_all_paths | 3.01 | 0.07 | 3.11 | |
| get_annotation_resources | 0.03 | 0.01 | 0.60 | |
| get_complex_genes | 1.35 | 0.05 | 2.87 | |
| get_complex_resources | 0.04 | 0.00 | 0.52 | |
| get_db | 0.68 | 0.00 | 0.72 | |
| get_enzsub_resources | 0.04 | 0.00 | 0.59 | |
| get_interaction_resources | 0.03 | 0.00 | 0.58 | |
| get_intercell_categories | 0.30 | 0.06 | 0.98 | |
| get_intercell_generic_categories | 0.03 | 0.00 | 0.03 | |
| get_intercell_resources | 0.03 | 0.02 | 0.50 | |
| get_ontology_db | 0.33 | 0.00 | 0.33 | |
| get_resources | 0.03 | 0.00 | 0.58 | |
| get_signed_ptms | 1.25 | 0.03 | 1.85 | |
| giant_component | 4.92 | 0.26 | 6.40 | |
| go_annot_download | 15.27 | 1.29 | 33.68 | |
| go_annot_slim | 0 | 0 | 0 | |
| go_ontology_download | 0.15 | 0.00 | 0.16 | |
| guide2pharma_download | 2.35 | 0.36 | 4.55 | |
| harmonizome_download | 0.43 | 0.01 | 0.54 | |
| has_extra_attrs | 3.61 | 0.03 | 3.66 | |
| hpo_download | 3.80 | 0.36 | 4.25 | |
| htridb_download | 1.92 | 0.10 | 3.48 | |
| import_all_interactions | 1.19 | 0.17 | 3.47 | |
| import_dorothea_interactions | 1.26 | 0.15 | 3.33 | |
| import_intercell_network | 4.96 | 0.57 | 8.70 | |
| import_kinaseextra_interactions | 0.95 | 0.07 | 2.83 | |
| import_ligrecextra_interactions | 0.55 | 0.11 | 2.24 | |
| import_lncrna_mrna_interactions | 0.47 | 0.08 | 1.68 | |
| import_mirnatarget_interactions | 0.81 | 0.16 | 2.55 | |
| import_omnipath_annotations | 0.45 | 0.04 | 1.73 | |
| import_omnipath_complexes | 0.75 | 0.02 | 3.03 | |
| import_omnipath_enzsub | 0.50 | 0.03 | 1.25 | |
| import_omnipath_interactions | 0.24 | 0.00 | 1.13 | |
| import_omnipath_intercell | 0.65 | 0.17 | 6.17 | |
| import_pathwayextra_interactions | 0.71 | 0.12 | 2.73 | |
| import_post_translational_interactions | 0.62 | 0.13 | 3.10 | |
| import_small_molecule_protein_interactions | 0.47 | 0.14 | 1.83 | |
| import_tf_mirna_interactions | 0.70 | 0.09 | 2.19 | |
| import_tf_target_interactions | 1.20 | 0.08 | 2.94 | |
| import_transcriptional_interactions | 1.67 | 0.20 | 9.54 | |
| inbiomap_download | 0 | 0 | 0 | |
| inbiomap_raw | 0 | 0 | 0 | |
| interaction_graph | 0.32 | 0.00 | 0.88 | |
| intercell_categories | 0.06 | 0.00 | 0.15 | |
| intercell_consensus_filter | 1.86 | 0.36 | 3.16 | |
| is_ontology_id | 0 | 0 | 0 | |
| kegg_info | 0.78 | 0.00 | 4.28 | |
| kegg_open | 0 | 0 | 0 | |
| kegg_pathway_annotations | 0.00 | 0.00 | 0.02 | |
| kegg_pathway_download | 3.44 | 0.10 | 21.86 | |
| kegg_pathway_list | 0.73 | 0.01 | 3.90 | |
| kegg_pathways_download | 0 | 0 | 0 | |
| kegg_picture | 0.19 | 0.02 | 2.11 | |
| kegg_process | 0.17 | 0.00 | 0.17 | |
| load_db | 0.33 | 0.03 | 0.36 | |
| nichenet_build_model | 0 | 0 | 0 | |
| nichenet_expression_data | 0 | 0 | 0 | |
| nichenet_gr_network | 6.31 | 0.45 | 7.91 | |
| nichenet_gr_network_evex | 57.24 | 0.77 | 58.30 | |
| nichenet_gr_network_harmonizome | 3.59 | 0.30 | 4.32 | |
| nichenet_gr_network_htridb | 0.06 | 0.00 | 0.07 | |
| nichenet_gr_network_omnipath | 8.86 | 0.26 | 10.11 | |
| nichenet_gr_network_pathwaycommons | 9.27 | 0.61 | 9.78 | |
| nichenet_gr_network_regnetwork | 2.19 | 0.11 | 2.61 | |
| nichenet_gr_network_remap | 0 | 0 | 0 | |
| nichenet_gr_network_trrust | 1.61 | 0.03 | 6.38 | |
| nichenet_ligand_activities | 0 | 0 | 0 | |
| nichenet_ligand_target_links | 0 | 0 | 0 | |
| nichenet_ligand_target_matrix | 0 | 0 | 0 | |
| nichenet_lr_network | 161.09 | 0.74 | 163.45 | |
| nichenet_lr_network_guide2pharma | 0.49 | 0.04 | 0.53 | |
| nichenet_lr_network_omnipath | 37.33 | 1.17 | 45.16 | |
| nichenet_lr_network_ramilowski | 0.21 | 0.02 | 0.23 | |
| nichenet_main | 0 | 0 | 0 | |
| nichenet_networks | 67.13 | 0.58 | 68.89 | |
| nichenet_optimization | 0 | 0 | 0 | |
| nichenet_remove_orphan_ligands | 0 | 0 | 0 | |
| nichenet_results_dir | 0 | 0 | 0 | |
| nichenet_signaling_network | 37.95 | 1.48 | 46.21 | |
| nichenet_signaling_network_cpdb | 0 | 0 | 0 | |
| nichenet_signaling_network_evex | 7.78 | 0.45 | 8.75 | |
| nichenet_signaling_network_harmonizome | 0.18 | 0.00 | 0.17 | |
| nichenet_signaling_network_inbiomap | 0 | 0 | 0 | |
| nichenet_signaling_network_omnipath | 5.23 | 0.04 | 5.28 | |
| nichenet_signaling_network_pathwaycommons | 1.87 | 0.04 | 1.91 | |
| nichenet_signaling_network_vinayagam | 0.75 | 0.04 | 0.89 | |
| nichenet_test | 0 | 0 | 0 | |
| nichenet_workarounds | 0 | 0 | 0 | |
| obo_parser | 0.36 | 0.02 | 0.42 | |
| omnipath_cache_autoclean | 0 | 0 | 0 | |
| omnipath_cache_clean | 0.02 | 0.00 | 0.01 | |
| omnipath_cache_clean_db | 0.31 | 0.00 | 0.32 | |
| omnipath_cache_download_ready | 0.81 | 0.06 | 0.97 | |
| omnipath_cache_filter_versions | 0.07 | 0.04 | 0.14 | |
| omnipath_cache_get | 0.04 | 0.02 | 0.06 | |
| omnipath_cache_key | 0 | 0 | 0 | |
| omnipath_cache_latest_or_new | 0.05 | 0.00 | 0.05 | |
| omnipath_cache_load | 0.50 | 0.01 | 1.22 | |
| omnipath_cache_move_in | 0.14 | 0.02 | 0.20 | |
| omnipath_cache_remove | 0.10 | 0.01 | 0.14 | |
| omnipath_cache_save | 0.46 | 0.02 | 0.50 | |
| omnipath_cache_search | 0 | 0 | 0 | |
| omnipath_cache_set_ext | 0.08 | 0.03 | 0.14 | |
| omnipath_cache_update_status | 0.05 | 0.00 | 0.06 | |
| omnipath_cache_wipe | 0 | 0 | 0 | |
| omnipath_get_config_path | 0 | 0 | 0 | |
| omnipath_load_config | 0 | 0 | 0 | |
| omnipath_log | 0 | 0 | 0 | |
| omnipath_logfile | 0 | 0 | 0 | |
| omnipath_msg | 0 | 0 | 0 | |
| omnipath_reset_config | 0 | 0 | 0 | |
| omnipath_save_config | 0 | 0 | 0 | |
| omnipath_set_cachedir | 0 | 0 | 0 | |
| omnipath_set_console_loglevel | 0 | 0 | 0 | |
| omnipath_set_logfile_loglevel | 0 | 0 | 0 | |
| omnipath_set_loglevel | 0 | 0 | 0 | |
| omnipath_show_db | 0.14 | 0.00 | 0.14 | |
| omnipath_unlock_cache_db | 0 | 0 | 0 | |
| ontology_ensure_id | 0.03 | 0.00 | 0.03 | |
| ontology_ensure_name | 0.03 | 0.00 | 0.03 | |
| ontology_name_id | 0.05 | 0.00 | 0.05 | |
| pathwaycommons_download | 7.67 | 0.66 | 8.19 | |
| pivot_annotations | 25.35 | 1.44 | 29.18 | |
| preppi_download | 6.39 | 0.93 | 8.04 | |
| preppi_filter | 6.76 | 0.79 | 6.21 | |
| print_bma_motif_es | 0.38 | 0.06 | 1.46 | |
| print_bma_motif_vs | 0.11 | 0.03 | 0.87 | |
| print_interactions | 2.40 | 0.19 | 5.71 | |
| print_path_es | 0.47 | 0.14 | 2.01 | |
| print_path_vs | 1.50 | 0.12 | 3.92 | |
| pubmed_open | 1.49 | 0.16 | 2.94 | |
| ramilowski_download | 0.29 | 0.06 | 2.69 | |
| regnetwork_directions | 0.27 | 0.00 | 0.30 | |
| regnetwork_download | 1.36 | 0.13 | 1.56 | |
| relations_list_to_table | 0.17 | 0.04 | 0.23 | |
| relations_table_to_graph | 0.07 | 0.00 | 0.08 | |
| relations_table_to_list | 0.11 | 0.02 | 0.17 | |
| remap_dorothea_download | 0.30 | 0.03 | 5.58 | |
| remap_filtered | 0 | 0 | 0 | |
| remap_tf_target_download | 0 | 0 | 0 | |
| resources_colname | 0.75 | 0.06 | 2.21 | |
| simplify_intercell_network | 58.19 | 0.69 | 61.86 | |
| swap_relations | 0.26 | 0.00 | 0.30 | |
| tfcensus_download | 0.55 | 0.00 | 0.64 | |
| translate_ids | 1.16 | 0.08 | 13.13 | |
| trrust_download | 0.95 | 0.01 | 5.59 | |
| uniprot_full_id_mapping_table | 1.21 | 0.05 | 13.32 | |
| uniprot_id_mapping_table | 0.54 | 0.02 | 5.86 | |
| unique_intercell_network | 54.85 | 0.28 | 55.14 | |
| vinayagam_download | 0.82 | 0.12 | 4.55 | |
| walk_ontology_tree | 0.59 | 0.00 | 0.59 | |
| with_extra_attrs | 5.75 | 0.22 | 7.11 | |
| with_references | 0.53 | 0.13 | 2.02 | |
| zenodo_download | 0 | 0 | 0 | |