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This page was generated on 2022-03-18 11:08:07 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for MSstatsTMT on riesling1


To the developers/maintainers of the MSstatsTMT package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsTMT.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1241/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSstatsTMT 2.3.7  (landing page)
Ting Huang
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/MSstatsTMT
git_branch: master
git_last_commit: 3648ead
git_last_commit_date: 2022-02-18 13:33:24 -0400 (Fri, 18 Feb 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'MSstats' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'MSstats' which is not available

Summary

Package: MSstatsTMT
Version: 2.3.7
Command: rm -rf MSstatsTMT.buildbin-libdir && mkdir MSstatsTMT.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MSstatsTMT.buildbin-libdir MSstatsTMT_2.3.7.tar.gz
StartedAt: 2022-03-17 21:23:29 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:25:06 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 96.5 seconds
RetCode: 0
Status:   OK  
PackageFile: MSstatsTMT_2.3.7.zip
PackageFileSize: 1.996 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MSstatsTMT.buildbin-libdir && mkdir MSstatsTMT.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MSstatsTMT.buildbin-libdir MSstatsTMT_2.3.7.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'MSstatsTMT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSstatsTMT'
    finding HTML links ... done
    MSstatsComparisonModelSingleTMT         html  
    MSstatsFitComparisonModelsTMT           html  
    MSstatsGroupComparisonOutputTMT         html  
    MSstatsGroupComparisonTMT               html  
    MSstatsModerateTTest                    html  
    MSstatsNormalizeTMT                     html  
    MSstatsPrepareForGroupComparisonTMT     html  
    MSstatsPrepareForSummarizationTMT       html  
    MSstatsSummarizationOutputTMT           html  
    MSstatsSummarizeTMT                     html  
    MSstatsTMT                              html  
    MSstatsTestSingleProteinTMT             html  
    MaxQtoMSstatsTMTFormat                  html  
    OpenMStoMSstatsTMTFormat                html  
    PDtoMSstatsTMTFormat                    html  
    PhilosophertoMSstatsTMTFormat           html  
    SpectroMinetoMSstatsTMTFormat           html  
    annotation.mine                         html  
    annotation.mq                           html  
    annotation.pd                           html  
    dataProcessPlotsTMT                     html  
    dot-checkContrastMatrix                 html  
    dot-checkSummarizationParams            html  
    dot-countRunsWithNorm                   html  
    dot-documentFunction                    html  
    dot-getNormalizationAbundance           html  
    dot-getRunsMedian                       html  
    dot-handleSingleContrastTMT             html  
    dot-logSum                              html  
    dot-logSummarizationParams              html  
    dot-makeContrastSingleTMT               html  
    dot-makeFactorColumnsTMT                html  
    dot-medianPolish                        html  
    dot-normalizePeptides                   html  
    dot-normalizeProteins                   html  
    dot-prepareForSummarization             html  
    dot-removeRedundantChannels             html  
    dot-summarizeMSstats                    html  
    dot-summarizeSimpleStat                 html  
    dot-summarizeTMP                        html  
    dot-summarizeTMT                        html  
    evidence                                html  
    getProcessedTMT                         html  
    getSummarizedTMT                        html  
    groupComparisonTMT                      html  
    input.pd                                html  
    proteinGroups                           html  
    proteinSummarization                    html  
    quant.pd.msstats                        html  
    raw.mine                                html  
    raw.om                                  html  
    raw.pd                                  html  
    test.pairwise                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MSstatsTMT' as MSstatsTMT_2.3.7.zip
* DONE (MSstatsTMT)