Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-06-24 12:07:37 -0400 (Fri, 24 Jun 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 (2022-04-22) -- "Vigorous Calisthenics" | 4380 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" | 4156 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.0 (2022-04-22) -- "Vigorous Calisthenics" | 4221 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the INSPEcT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/INSPEcT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 961/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
INSPEcT 1.26.0 (landing page) Stefano de Pretis
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: INSPEcT |
Version: 1.26.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings INSPEcT_1.26.0.tar.gz |
StartedAt: 2022-06-24 04:08:46 -0400 (Fri, 24 Jun 2022) |
EndedAt: 2022-06-24 04:35:17 -0400 (Fri, 24 Jun 2022) |
EllapsedTime: 1590.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: INSPEcT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings INSPEcT_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/INSPEcT.Rcheck’ * using R version 4.2.0 (2022-04-22) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘INSPEcT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘INSPEcT’ version ‘1.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘INSPEcT’ can be installed ... OK * checking installed package size ... NOTE installed size is 7.1Mb sub-directories of 1Mb or more: R 1.8Mb data 2.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE output_pars: no visible global function definition for ‘plot.new’ plotSingleRNADynamic: no visible global function definition for ‘lines’ Undefined global functions or variables: lines plot.new Consider adding importFrom("graphics", "lines", "plot.new") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed makeSimDataset 204.977 0.544 207.938 quantifyExpressionsFromBAMs 65.901 6.821 76.558 rocCurve 70.311 0.281 74.707 rocThresholds 70.050 0.236 74.825 makeSimModel 69.674 0.212 70.861 INSPEcT_diffsteady-class 65.379 0.464 67.306 compareSteady 63.086 0.178 64.456 plotMA 62.910 0.170 66.540 modelRates 39.669 0.117 40.857 newINSPEcT 39.095 0.095 40.003 quantifyExpressionsFromTrCounts 34.903 0.099 36.190 processingDelay 33.082 0.090 34.838 makeOscillatorySimModel 17.084 0.084 17.627 compareSteadyNoNascent 13.985 0.046 14.666 inspectFromPCR 8.764 0.044 9.264 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.15-bioc/meat/INSPEcT.Rcheck/00check.log’ for details.
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘INSPEcT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
name | user | system | elapsed | |
AIC-INSPEcT-method | 0.374 | 0.013 | 0.406 | |
Extract | 0.759 | 0.016 | 0.805 | |
INSPEcT_diffsteady-class | 65.379 | 0.464 | 67.306 | |
calculateRatePvals | 0.482 | 0.012 | 0.498 | |
chisqmodel | 0.376 | 0.005 | 0.384 | |
chisqtest | 0.385 | 0.014 | 0.400 | |
combine | 0.751 | 0.012 | 0.769 | |
compareSteady | 63.086 | 0.178 | 64.456 | |
compareSteadyNoNascent | 13.985 | 0.046 | 14.666 | |
convergence | 0.383 | 0.011 | 0.422 | |
geneClass | 0.479 | 0.008 | 0.507 | |
inHeatmap | 0.431 | 0.012 | 0.447 | |
inspectFromPCR | 8.764 | 0.044 | 9.264 | |
labeledSF | 0.377 | 0.012 | 0.407 | |
logLik | 0.380 | 0.013 | 0.409 | |
makeModelRates | 0.479 | 0.007 | 0.512 | |
makeOscillatorySimModel | 17.084 | 0.084 | 17.627 | |
makeSimDataset | 204.977 | 0.544 | 207.938 | |
makeSimModel | 69.674 | 0.212 | 70.861 | |
modelRates | 39.669 | 0.117 | 40.857 | |
modelRatesNF | 3.249 | 0.043 | 3.328 | |
modelSelection | 0.377 | 0.004 | 0.387 | |
modelingParams | 0.370 | 0.006 | 0.381 | |
nGenes | 0.374 | 0.010 | 0.387 | |
nTpts | 0.376 | 0.007 | 0.385 | |
newINSPEcT | 39.095 | 0.095 | 40.003 | |
plotGene | 0.455 | 0.015 | 0.473 | |
plotMA | 62.91 | 0.17 | 66.54 | |
processingDelay | 33.082 | 0.090 | 34.838 | |
quantifyExpressionsFromBAMs | 65.901 | 6.821 | 76.558 | |
quantifyExpressionsFromTrCounts | 34.903 | 0.099 | 36.190 | |
ratePvals | 0.371 | 0.004 | 0.404 | |
ratesFirstGuess | 0.373 | 0.005 | 0.384 | |
ratesFirstGuessVar | 0.366 | 0.005 | 0.422 | |
removeModel | 0.585 | 0.004 | 0.606 | |
rocCurve | 70.311 | 0.281 | 74.707 | |
rocThresholds | 70.050 | 0.236 | 74.825 | |
split | 0.567 | 0.004 | 0.616 | |
tpts | 0.362 | 0.003 | 0.377 | |
viewConfidenceIntervals | 0.372 | 0.005 | 0.385 | |
viewModelRates | 0.372 | 0.004 | 0.403 | |