Alan Murphy
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/EWCE |
| git_branch: master |
| git_last_commit: eaf2c4f |
| git_last_commit_date: 2022-02-09 14:10:46 -0400 (Wed, 09 Feb 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:28 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the EWCE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EWCE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 613/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EWCE 1.3.3 (landing page) Alan Murphy
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: EWCE |
| Version: 1.3.3 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL EWCE |
| StartedAt: 2022-03-17 16:16:50 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 16:18:07 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 77.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL EWCE
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'EWCE' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'EWCE'
finding HTML links ... done
EWCE-package html
add_res_to_merging_list html
assign_cores html
bin_columns_into_quantiles html
bin_specificity_into_quantiles html
bootstrap_enrichment_test html
bootstrap_plot html
calc_quantiles html
calculate_meanexp_for_level html
calculate_specificity_for_level html
cell_list_dist html
check_annotLevels html
check_args_for_bootstrap_plot_generation
html
check_bootstrap_args html
check_controlled_args html
check_ewce_expression_data_args html
check_ewce_genelist_inputs html
check_full_results html
check_generate_controlled_bootstrap_geneset
html
check_group_name html
check_nas html
check_numeric html
check_percent_hits html
check_sce html
check_species html
controlled_geneset_enrichment html
convert_new_ewce_to_old html
convert_old_ewce_to_new html
create_background_multilist html
create_list_network html
ctd_to_sce html
delayedarray_normalize html
drop_nonexpressed_cells html
drop_nonexpressed_genes html
drop_uninformative_genes html
dt_to_df html
ewce_expression_data html
ewce_plot html
example_bootstrap_results html
example_transcriptome_results html
extract_matrix html
filter_ctd_genes html
filter_genes_without_1to1_homolog html
filter_nonorthologs html
filter_variance_quantiles html
fix_bad_hgnc_symbols html
fix_bad_mgi_symbols html
fix_celltype_names html
fix_celltype_names_full_results html
generate_bootstrap_plots html
generate_bootstrap_plots_for_transcriptome
html
generate_celltype_data html
generate_controlled_bootstrap_geneset html
get_celltype_table html
get_ctd_levels html
get_exp_data_for_bootstrapped_genes html
get_graph_theme html
get_sig_results html
get_summed_proportions html
is_32bit html
is_celltypedataset html
is_ctd_standardised html
is_delayed_array html
is_matrix html
is_sparse_matrix html
list_species html
load_rdata html
max_ctd_depth html
merge_ctd html
merge_sce html
merge_sce_list html
merge_two_expfiles html
merged_ewce html
message_parallel html
messager html
myScalesComma html
plot_bootstrap_plots html
plot_ctd html
plot_log_bootstrap_distributions html
plot_with_bootstrap_distributions html
prep.dendro html
prep_dendro html
prepare_genesize_control_network html
prepare_tt html
report_dge html
report_results html
run_deseq2 html
run_limma html
run_mast html
sce_lists_apply html
sce_merged_apply html
sct_normalize html
standardise_ctd html
to_dataframe html
to_delayed_array html
to_sparse_matrix html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EWCE)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'GeneStructureTools' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'Pviz' is missing or broken
done