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This page was generated on 2022-03-18 11:07:23 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for DirichletMultinomial on riesling1


To the developers/maintainers of the DirichletMultinomial package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DirichletMultinomial.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 522/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DirichletMultinomial 1.37.0  (landing page)
Martin Morgan
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/DirichletMultinomial
git_branch: master
git_last_commit: 13a0c2b
git_last_commit_date: 2021-10-26 12:03:07 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DirichletMultinomial
Version: 1.37.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL DirichletMultinomial
StartedAt: 2022-03-17 15:34:20 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:35:42 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 82.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL DirichletMultinomial
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'DirichletMultinomial' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c dirichlet_fit.c -o dirichlet_fit.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function 'hessian':
dirichlet_fit_main.c:391:34: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
             adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha;
                          ~~~~~~~~^~~
dirichlet_fit_main.c:393:33: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
             adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha;
                         ~~~~~~~~^~~
dirichlet_fit_main.c: In function 'dirichlet_fit_main':
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
     int signum, status;
                 ^~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DirichletMultinomial'
    finding HTML links ... done
    DMN-class                               html  
    DMNGroup-class                          html  
    finding level-2 HTML links ... done

    DirichletMultinomial-package            html  
    cvdmngroup                              html  
    dataobjects                             html  
    dmn                                     html  
    dmngroup                                html  
    fitted                                  html  
    heatmapdmn                              html  
    roc                                     html  
    util                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DirichletMultinomial)
Making 'packages.html' ... done