Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-10-19 13:21:14 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for CellBarcode on palomino3


To the developers/maintainers of the CellBarcode package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellBarcode.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 270/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellBarcode 1.2.0  (landing page)
Wenjie Sun
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/CellBarcode
git_branch: RELEASE_3_15
git_last_commit: bdde81f
git_last_commit_date: 2022-04-26 12:19:50 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CellBarcode
Version: 1.2.0
Command: rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CellBarcode.buildbin-libdir CellBarcode_1.2.0.tar.gz
StartedAt: 2022-10-19 05:38:53 -0400 (Wed, 19 Oct 2022)
EndedAt: 2022-10-19 05:39:51 -0400 (Wed, 19 Oct 2022)
EllapsedTime: 57.6 seconds
RetCode: 0
Status:   OK  
PackageFile: CellBarcode_1.2.0.zip
PackageFileSize: 2.842 MiB

Command output

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###
### Running command:
###
###   rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CellBarcode.buildbin-libdir CellBarcode_1.2.0.tar.gz
###
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* installing *source* package 'CellBarcode' ...
** using staged installation
** libs
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c lib.cpp -o lib.o
lib.cpp: In function 'int hamm_dist(std::string, std::string)':
lib.cpp:59:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   59 |     for (int i=0; i < s1.length(); i++) {
      |                   ~~^~~~~~~~~~~~~
lib.cpp: In function 'Rcpp::List seq_correct(std::vector<std::__cxx11::basic_string<char> >, Rcpp::IntegerVector, int, int, int, int, int, int)':
lib.cpp:123:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  123 |     for (auto i=0; i<seq.size(); i++) {
      |                    ~^~~~~~~~~~~
lib.cpp:159:18: warning: variable 'flag_is_connetcted' set but not used [-Wunused-but-set-variable]
  159 |             bool flag_is_connetcted = false;
      |                  ^~~~~~~~~~~~~~~~~~
lib.cpp:230:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  230 |     for (auto i=0; i<res.size(); i++) {
      |                    ~^~~~~~~~~~~
g++ -std=gnu++11 -shared -s -static-libgcc -o CellBarcode.dll tmp.def RcppExports.o lib.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/meat/CellBarcode.buildbin-libdir/00LOCK-CellBarcode/00new/CellBarcode/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CellBarcode' as CellBarcode_1.2.0.zip
* DONE (CellBarcode)