Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-04-13 12:07:27 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for synapter on tokay2


To the developers/maintainers of the synapter package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/synapter.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1919/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
synapter 2.18.0  (landing page)
Laurent Gatto
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/synapter
git_branch: RELEASE_3_14
git_last_commit: 1ee8f37
git_last_commit_date: 2021-10-26 12:03:45 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: synapter
Version: 2.18.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/synapter_2.18.0.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL synapter_2.18.0.zip && rm synapter_2.18.0.tar.gz synapter_2.18.0.zip
StartedAt: 2022-04-12 06:26:47 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:29:29 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 161.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/synapter_2.18.0.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL synapter_2.18.0.zip && rm synapter_2.18.0.tar.gz synapter_2.18.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 1159k    0  1137    0     0  13911      0  0:01:25 --:--:--  0:01:25 13865
100 1159k  100 1159k    0     0  1408k      0 --:--:-- --:--:-- --:--:-- 1408k

install for i386

* installing *source* package 'synapter' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'synapter'
    finding HTML links ... done
    MasterFdrResults-class                  html  
    MasterPeptides-class                    html  
    Synapter                                html  
    finding level-2 HTML links ... done

    createUniquePeptideDbRds                html  
    defunct                                 html  
    estimateMasterFdr                       html  
    inspectPeptideScores                    html  
    makeMaster                              html  
    plotCrossMatching                       html  
    requantify                              html  
    rescaleForTop3                          html  
    synapter-package                        html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/synapter.buildbin-libdir/00LOCK-synapter/00new/synapter/help/synapter.html
    synapterGuide                           html  
    synapterPlgsAgreement                   html  
    synapterTinyData                        html  
    synergise                               html  
    synergise2                              html  
** building package indices
** installing vignettes
   'fragmentmatching.Rmd' using 'UTF-8' 
   'synapter.Rmd' using 'UTF-8' 
   'synapter2.Rmd' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'synapter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synapter' as synapter_2.18.0.zip
* DONE (synapter)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'synapter' successfully unpacked and MD5 sums checked