Pooja Gangras
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/surfaltr |
| git_branch: RELEASE_3_14 |
| git_last_commit: 25e74d9 |
| git_last_commit_date: 2021-10-26 13:12:50 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:26 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the surfaltr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/surfaltr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1905/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| surfaltr 1.0.0 (landing page) Pooja Gangras
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: surfaltr |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/surfaltr_1.0.0.tar.gz && rm -rf surfaltr.buildbin-libdir && mkdir surfaltr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=surfaltr.buildbin-libdir surfaltr_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL surfaltr_1.0.0.zip && rm surfaltr_1.0.0.tar.gz surfaltr_1.0.0.zip |
| StartedAt: 2022-04-12 06:39:30 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:40:51 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 81.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/surfaltr_1.0.0.tar.gz && rm -rf surfaltr.buildbin-libdir && mkdir surfaltr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=surfaltr.buildbin-libdir surfaltr_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL surfaltr_1.0.0.zip && rm surfaltr_1.0.0.tar.gz surfaltr_1.0.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
4 3169k 4 151k 0 0 501k 0 0:00:06 --:--:-- 0:00:06 501k
43 3169k 43 1391k 0 0 1065k 0 0:00:02 0:00:01 0:00:01 1065k
100 3169k 100 3169k 0 0 1469k 0 0:00:02 0:00:02 --:--:-- 1470k
install for i386
* installing *source* package 'surfaltr' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'surfaltr'
finding HTML links ... done
Crb1 html
align_org_prts html
align_prts html
check_tmhmm_install html
clean_data html
ensembl_db_retrieval html
format_ids html
get_aas html
get_pairs html
get_phobius html
get_prts html
get_tmhmm html
graph_from_aas html
graph_from_ids html
graph_prots html
hpa_genes html
hpa_mouse_genes html
merge_trans html
plot_isoforms html
process_tmhmm html
rank_prts html
run_phobius html
split_fasta html
test_surfaltr html
tmhmm_fix_path html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'surfaltr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'surfaltr' as surfaltr_1.0.0.zip
* DONE (surfaltr)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'surfaltr' successfully unpacked and MD5 sums checked