Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:26 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for surfaltr on tokay2


To the developers/maintainers of the surfaltr package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/surfaltr.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1905/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
surfaltr 1.0.0  (landing page)
Pooja Gangras
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/surfaltr
git_branch: RELEASE_3_14
git_last_commit: 25e74d9
git_last_commit_date: 2021-10-26 13:12:50 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: surfaltr
Version: 1.0.0
Command: rm -rf surfaltr.buildbin-libdir && mkdir surfaltr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=surfaltr.buildbin-libdir surfaltr_1.0.0.tar.gz
StartedAt: 2022-04-13 07:13:15 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 07:13:45 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 29.4 seconds
RetCode: 0
Status:   OK  
PackageFile: surfaltr_1.0.0.zip
PackageFileSize: 1.878 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf surfaltr.buildbin-libdir && mkdir surfaltr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=surfaltr.buildbin-libdir surfaltr_1.0.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'surfaltr' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'surfaltr'
    finding HTML links ... done
    Crb1                                    html  
    align_org_prts                          html  
    align_prts                              html  
    check_tmhmm_install                     html  
    clean_data                              html  
    ensembl_db_retrieval                    html  
    format_ids                              html  
    get_aas                                 html  
    get_pairs                               html  
    get_phobius                             html  
    get_prts                                html  
    get_tmhmm                               html  
    graph_from_aas                          html  
    graph_from_ids                          html  
    graph_prots                             html  
    hpa_genes                               html  
    hpa_mouse_genes                         html  
    merge_trans                             html  
    plot_isoforms                           html  
    process_tmhmm                           html  
    rank_prts                               html  
    run_phobius                             html  
    split_fasta                             html  
    test_surfaltr                           html  
    tmhmm_fix_path                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'surfaltr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'surfaltr' as surfaltr_1.0.0.zip
* DONE (surfaltr)