Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:11 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for rCGH on tokay2


To the developers/maintainers of the rCGH package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rCGH.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1544/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rCGH 1.24.0  (landing page)
Frederic Commo
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/rCGH
git_branch: RELEASE_3_14
git_last_commit: ee2a9d3
git_last_commit_date: 2021-10-26 12:21:28 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rCGH
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rCGH_1.24.0.tar.gz && rm -rf rCGH.buildbin-libdir && mkdir rCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rCGH.buildbin-libdir rCGH_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rCGH_1.24.0.zip && rm rCGH_1.24.0.tar.gz rCGH_1.24.0.zip
StartedAt: 2022-04-12 07:04:13 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:06:49 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 156.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rCGH_1.24.0.tar.gz && rm -rf rCGH.buildbin-libdir && mkdir rCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rCGH.buildbin-libdir rCGH_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rCGH_1.24.0.zip && rm rCGH_1.24.0.tar.gz rCGH_1.24.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  4 3768k    4  154k    0     0   713k      0  0:00:05 --:--:--  0:00:05  713k
 68 3768k   68 2579k    0     0  2139k      0  0:00:01  0:00:01 --:--:-- 2139k
100 3768k  100 3768k    0     0  2390k      0  0:00:01  0:00:01 --:--:-- 2389k

install for i386

* installing *source* package 'rCGH' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rCGH'
    finding HTML links ... done
    AllAccessors                            html  
    EMnormalize                             html  
    adjustSignal                            html  
    agilentDB                               html  
    byGeneTable                             html  
    hg18                                    html  
    hg19                                    html  
    hg38                                    html  
    multiplot                               html  
    plotDensity                             html  
    plotLOH                                 html  
    plotProfile                             html  
    rCGH-Agilent-class                      html  
    rCGH-SNP6-class                         html  
    rCGH-class                              html  
    rCGH-cytoScan-class                     html  
    rCGH-generic-class                      html  
    rCGH-oncoScan-class                     html  
    rCGH-package                            html  
    readAffyCytoScan                        html  
    readAffyOncoScan                        html  
    readAffySNP6                            html  
    readAgilent                             html  
    readGeneric                             html  
    recenter                                html  
    segmentCGH                              html  
    setInfo                                 html  
    show-methods                            html  
    view                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rCGH' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rCGH' as rCGH_1.24.0.zip
* DONE (rCGH)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'rCGH' successfully unpacked and MD5 sums checked