Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-17 13:06:42 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for oligoClasses on tokay2


To the developers/maintainers of the oligoClasses package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/oligoClasses.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1318/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
oligoClasses 1.56.0  (landing page)
Benilton Carvalho and Robert Scharpf
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/oligoClasses
git_branch: RELEASE_3_14
git_last_commit: 6e6c7b4
git_last_commit_date: 2021-10-26 11:51:32 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: oligoClasses
Version: 1.56.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/oligoClasses_1.56.0.tar.gz && rm -rf oligoClasses.buildbin-libdir && mkdir oligoClasses.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oligoClasses.buildbin-libdir oligoClasses_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL oligoClasses_1.56.0.zip && rm oligoClasses_1.56.0.tar.gz oligoClasses_1.56.0.zip
StartedAt: 2022-01-16 05:31:47 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 05:35:21 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 214.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/oligoClasses_1.56.0.tar.gz && rm -rf oligoClasses.buildbin-libdir && mkdir oligoClasses.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oligoClasses.buildbin-libdir oligoClasses_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL oligoClasses_1.56.0.zip && rm oligoClasses_1.56.0.tar.gz oligoClasses_1.56.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  365k  100  365k    0     0  1996k      0 --:--:-- --:--:-- --:--:-- 2005k

install for i386

* installing *source* package 'oligoClasses' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'oligoClasses'
    finding HTML links ... done
    AlleleSet-class                         html  
    finding level-2 HTML links ... done

    AlleleSet-methods                       html  
    AssayData-methods                       html  
    AssayDataList                           html  
    BeadStudioSet-class                     html  
    BeadStudioSetList-class                 html  
    CNSet-class                             html  
    ClassesNotExported                      html  
    CopyNumberSet-class                     html  
    CopyNumberSet-methods                   html  
    DBPDInfo-class                          html  
    FeatureSetExtensions-class              html  
    GRanges-methods                         html  
    GenomeAnnotatedDataFrame-class          html  
    GenomeAnnotatedDataFrameFrom-methods    html  
    SnpSet-methods                          html  
    SnpSet2-class                           html  
    SnpSuperSet-class                       html  
    SummarizedExperiment-methods            html  
    affyPlatforms                           html  
    annotationPackages                      html  
    assayDataList-methods                   html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/oligoClasses.buildbin-libdir/00LOCK-oligoClasses/00new/oligoClasses/help/assayDataList.html
    batch                                   html  
    batchStatistics                         html  
    celfileDate                             html  
    celfileName                             html  
    checkExists                             html  
    checkOrder                              html  
    chromosome-methods                      html  
    chromosome2integer                      html  
    clusterOpts                             html  
    clusterOptsDeprecated                   html  
    createFF                                html  
    data-efsExample                         html  
    data-scqsExample                        html  
    data-sfsExample                         html  
    data-sqsExample                         html  
    db                                      html  
    defunct                                 html  
    exprs-methods                           html  
    featureDataList-methods                 html  
    ff_matrix                               html  
    ff_or_matrix-class                      html  
    ffdf                                    html  
    fileConnections                         html  
    flags                                   html  
    gSet-class                              html  
    gSetList-class                          html  
    generics                                html  
    genomeBuild                             html  
    geometry-methods                        html  
    getBar                                  html  
    getSequenceLengths                      html  
    i2p_p2i                                 html  
    integerMatrix                           html  
    is.ffmatrix                             html  
    isPackageLoaded                         html  
    isSnp-methods                           html  
    kind                                    html  
    largeObjects                            html  
    ldOpts                                  html  
    length-methods                          html  
    library2                                html  
    list.celfiles                           html  
    locusLevelData                          html  
    makeFeatureGRanges                      html  
    manufacturer-methods                    html  
    ocLapply                                html  
    oligoSetExample                         html  
    oligoSnpSet-methods                     html  
    parStatus                               html  
    pdPkgFromBioC                           html  
    platform-methods                        html  
    pmFragmentLength-methods                html  
    position-methods                        html  
    requireAnnotation                       html  
    requireClusterPkgSetDeprecated          html  
    sampleNames-methods                     html  
    splitVec                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'oligoClasses' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'oligoClasses' as oligoClasses_1.56.0.zip
* DONE (oligoClasses)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'oligoClasses' successfully unpacked and MD5 sums checked