Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-21 13:06:01 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodb on tokay2


To the developers/maintainers of the biodb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 175/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodb 1.2.2  (landing page)
Pierrick Roger
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/biodb
git_branch: RELEASE_3_14
git_last_commit: 79469df
git_last_commit_date: 2021-12-10 12:32:56 -0500 (Fri, 10 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodb
Version: 1.2.2
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:biodb.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings biodb_1.2.2.tar.gz
StartedAt: 2022-01-20 16:36:19 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 16:47:28 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 668.7 seconds
RetCode: 0
Status:   OK  
CheckDir: biodb.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:biodb.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings biodb_1.2.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'biodb/DESCRIPTION' ... OK
* this is package 'biodb' version '1.2.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodb' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    R      2.1Mb
    html   1.0Mb
    libs   2.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/libs/i386/biodb.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/libs/x64/biodb.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
upgradeExtPkg 3.46   0.01    5.21
genNewExtPkg  3.15   0.05   10.74
ExtConnClass  0.26   0.02    7.16
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
ExtPackage   3.72   0.08    9.14
genNewExtPkg 3.22   0.07    6.26
ExtGenerator 2.97   0.06    7.92
ExtCpp       0.61   0.00    7.81
ExtConnClass 0.33   0.02    5.18
ExtMakefile  0.31   0.02    5.14
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck/00check.log'
for details.



Installation output

biodb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/biodb_1.2.2.tar.gz && rm -rf biodb.buildbin-libdir && mkdir biodb.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biodb.buildbin-libdir biodb_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL biodb_1.2.2.zip && rm biodb_1.2.2.tar.gz biodb_1.2.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 99 2665k   99 2661k    0     0  3159k      0 --:--:-- --:--:-- --:--:-- 3161k
100 2665k  100 2665k    0     0  3162k      0 --:--:-- --:--:-- --:--:-- 3161k

install for i386

* installing *source* package 'biodb' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c closeMatchPpm.cpp -o closeMatchPpm.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-ms_matching.cpp -o test-100-ms_matching.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat.h:1,
                 from test-runner.cpp:7:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cout()':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat/testthat.h:145:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
 }
 ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cerr()':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat/testthat.h:152:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
 }
 ^
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o biodb.dll tmp.def RcppExports.o closeMatchPpm.o test-100-ms_matching.o test-runner.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/biodb.buildbin-libdir/00LOCK-biodb/00new/biodb/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'biodb'
    finding HTML links ... done
    BiodbBiocPersistentCache                html  
    BiodbConfig                             html  
    BiodbConn                               html  
    BiodbConnBase                           html  
    BiodbCsvEntry                           html  
    BiodbCustomPersistentCache              html  
    BiodbDbInfo                             html  
    BiodbDbsInfo                            html  
    BiodbEntry                              html  
    BiodbEntryField                         html  
    BiodbEntryFields                        html  
    BiodbFactory                            html  
    BiodbHtmlEntry                          html  
    BiodbJsonEntry                          html  
    BiodbListEntry                          html  
    BiodbMain                               html  
    BiodbPersistentCache                    html  
    BiodbRequest                            html  
    BiodbRequestScheduler                   html  
    BiodbRequestSchedulerRule               html  
    BiodbSdfEntry                           html  
    BiodbSqlBinaryOp                        html  
    BiodbSqlExpr                            html  
    BiodbSqlField                           html  
    BiodbSqlList                            html  
    BiodbSqlLogicalOp                       html  
    BiodbSqlQuery                           html  
    BiodbSqlValue                           html  
    BiodbTestMsgAck                         html  
    BiodbTxtEntry                           html  
    BiodbUrl                                html  
    BiodbXmlEntry                           html  
    CompCsvFileConn                         html  
    CompCsvFileEntry                        html  
    CompSqliteConn                          html  
    CompSqliteEntry                         html  
    CsvFileConn                             html  
    ExtConnClass                            html  
    ExtCpp                                  html  
    ExtDefinitions                          html  
    ExtDescriptionFile                      html  
    ExtEntryClass                           html  
    ExtFileGenerator                        html  
    ExtGenerator                            html  
    ExtGitignore                            html  
    ExtLicense                              html  
    ExtMakefile                             html  
    ExtPackage                              html  
    ExtPackageFile                          html  
    ExtRbuildignore                         html  
    ExtReadme                               html  
    ExtTests                                html  
    ExtTravisFile                           html  
    ExtVignette                             html  
    FileTemplate                            html  
    MassCsvFileConn                         html  
    MassCsvFileEntry                        html  
    MassSqliteConn                          html  
    MassSqliteEntry                         html  
    Progress                                html  
    Range                                   html  
    RequestResult                           html  
    SqliteConn                              html  
    TestRefEntries                          html  
    abstractClass                           html  
    abstractMethod                          html  
    biodb-package                           html  
    checkDeprecatedCacheFolders             html  
    closeMatchPpm                           html  
    connNameToClassPrefix                   html  
    createBiodbTestInstance                 html  
    df2str                                  html  
    doesRCurlRequestUrlExist                html  
    error                                   html  
    error0                                  html  
    genNewExtPkg                            html  
    getBaseUrlContent                       html  
    getBaseUrlRequestResult                 html  
    getConnClassName                        html  
    getConnTypes                            html  
    getDefaultCacheDir                      html  
    getEntryClassName                       html  
    getEntryTypes                           html  
    getLicenses                             html  
    getLogger                               html  
    getPkgName                              html  
    getRCurlContent                         html  
    getRCurlRequestResult                   html  
    getReposName                            html  
    getTestOutputDir                        html  
    getUrlContent                           html  
    getUrlRequestResult                     html  
    listTestRefEntries                      html  
    loadFileContents                        html  
    logDebug                                html  
    logDebug0                               html  
    logInfo                                 html  
    logInfo0                                html  
    logTrace                                html  
    logTrace0                               html  
    lst2str                                 html  
    makeRCurlOptions                        html  
    newInst                                 html  
    prepareFileContents                     html  
    runGenericTests                         html  
    saveContentsToFiles                     html  
    testContext                             html  
    testThat                                html  
    upgradeExtPkg                           html  
    warn                                    html  
    warn0                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biodb' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c closeMatchPpm.cpp -o closeMatchPpm.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-ms_matching.cpp -o test-100-ms_matching.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat.h:1,
                 from test-runner.cpp:7:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cout()':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat/testthat.h:145:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
 }
 ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cerr()':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/testthat/include/testthat/testthat.h:152:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
 }
 ^
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o biodb.dll tmp.def RcppExports.o closeMatchPpm.o test-100-ms_matching.o test-runner.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/biodb.buildbin-libdir/biodb/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biodb' as biodb_1.2.2.zip
* DONE (biodb)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'biodb' successfully unpacked and MD5 sums checked

Tests output

biodb.Rcheck/tests_i386/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodb")
biodb.INFO [2022-01-20 16:42:01.810][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:01.810][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 16:42:01.826][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:01.826][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 16:42:01.826][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 16:42:01.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.826][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 16:42:01.857][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 16:42:01.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.872][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 16:42:01.872][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 16:42:01.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.872][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 16:42:01.872][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 16:42:01.872][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 16:42:01.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.888][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 16:42:01.888][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 16:42:01.888][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 16:42:01.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.904][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 16:42:01.904][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 16:42:01.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.904][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 16:42:01.904][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 16:42:01.919][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 16:42:01.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.919][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 16:42:01.919][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 16:42:01.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.919][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 16:42:01.935][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 16:42:01.935][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 16:42:01.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.935][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:01.935][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 16:42:01.935][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 16:42:01.935][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 16:42:01.951][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 16:42:01.951][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 16:42:01.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.951][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 16:42:01.951][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 16:42:01.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.966][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 16:42:01.966][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 16:42:01.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.966][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 16:42:01.966][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 16:42:01.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.982][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 16:42:01.982][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 16:42:01.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.982][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 16:42:01.982][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 16:42:01.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.997][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:01.997][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 16:42:01.997][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-20 16:42:01.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:01.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:01.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:01.997][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 16:42:01.997][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 16:42:01.997][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 16:42:02.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.013][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:02.044][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.076][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 16:42:02.076][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.076][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:02.076][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.076][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.076][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:02.091][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:02.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:02.107][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:02.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:02.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:02.107][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.107][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:02.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:02.107][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.107][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.107][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:02.122][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:02.138][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:02.138][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:02.154][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:02.154][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:02.154][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.154][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.154][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:02.154][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:02.154][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.154][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.154][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:02.154][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.169][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:02.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:02.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:02.185][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:02.201][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.201][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:02.201][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:02.216][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.232][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:02.232][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.232][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:02.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:02.232][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:02.232][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:02.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:02.232][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:02.232][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:02.232][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.247][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:02.247][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:02.247][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:02.247][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:02.247][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:02.247][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:02.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:02.404][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 16:42:02.404][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 16:42:02.404][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 16:42:02.404][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 16:42:02.404][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 16:42:02.419][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 16:42:02.419][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:02.419][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:02.419][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 16:42:02.419][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 16:42:02.435][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 16:42:02.435][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 16:42:02.435][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:02.435][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:02.451][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 16:42:02.451][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 16:42:02.451][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 16:42:02.451][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 16:42:02.451][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 16:42:02.466][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 16:42:02.466][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 16:42:02.466][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 16:42:02.466][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 16:42:02.466][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 16:42:02.482][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 16:42:02.482][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 16:42:02.482][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 16:42:02.482][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 16:42:02.482][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 16:42:02.482][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 16:42:02.497][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 16:42:02.497][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 16:42:02.497][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 16:42:02.497][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 16:42:02.497][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 16:42:02.497][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 16:42:02.513][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 16:42:02.513][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 16:42:02.513][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 16:42:02.513][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 16:42:02.513][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 16:42:02.513][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 16:42:02.513][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 16:42:02.529][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 16:42:02.529][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 16:42:02.529][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 16:42:02.529][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 16:42:02.529][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 16:42:02.529][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 16:42:02.544][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 16:42:02.544][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 16:42:02.544][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 16:42:02.544][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 16:42:02.544][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 16:42:02.544][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 16:42:02.544][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 16:42:02.560][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 16:42:02.560][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 16:42:02.560][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 16:42:02.560][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 16:42:02.560][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 16:42:02.560][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 16:42:02.576][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 16:42:02.576][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 16:42:02.576][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 16:42:02.576][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 16:42:02.576][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 16:42:02.576][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 16:42:02.576][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 16:42:02.591][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 16:42:02.591][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 16:42:02.591][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 16:42:02.591][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 16:42:02.591][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 16:42:02.591][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 16:42:02.591][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 16:42:02.607][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 16:42:02.607][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 16:42:02.607][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 16:42:02.607][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 16:42:02.607][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 16:42:02.607][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 16:42:02.607][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 16:42:02.622][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 16:42:02.638][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-20 16:42:02.638][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:02.638][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:02.638][biodb::testContext] Test context - Test abstract declaration.
biodb.INFO [2022-01-20 16:42:02.638][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:02.638][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:02.638][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:02.638][biodb::testThat] Running test function  test.abstractClass.declaration  (" An abstract class cannot be instantiated. ").
biodb.INFO [2022-01-20 16:42:02.654][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:02.654][biodb::testThat] 
biodb.ERROR[2022-01-20 16:42:02.654][abstractClass] Class BiodbConnBase is abstract and thus cannot be instantiated.
biodb.INFO [2022-01-20 16:42:02.669][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-20 16:42:02.669][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-20 16:42:02.669][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:02.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:02.669][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:02.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 16:42:02.685][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:02.685][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:02.685][biodb::testContext] Test context - Testing BiodbUrl.
biodb.INFO [2022-01-20 16:42:02.685][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:02.685][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:02.701][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:02.701][biodb::testThat] Running test function  test_BiodbUrl  (" BiodbUrl works fine. ").
biodb.INFO [2022-01-20 16:42:02.701][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:02.701][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:02.716][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:02.716][biodb::testThat] Running test function  test_biodburl_encoding  (" BiodbUrl encoding works correctly. ").
biodb.INFO [2022-01-20 16:42:02.716][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:02.732][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:02.763][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:02.763][biodb::testThat] Running test function  test_getRCurlContent  (" getRCurlContent() works fine. ").
biodb.INFO [2022-01-20 16:42:02.763][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:02.763][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:04.044][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:04.044][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:04.044][biodb::testContext] Test context - Testing Range class.
biodb.INFO [2022-01-20 16:42:04.044][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:04.044][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:04.044][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:04.060][biodb::testThat] Running test function  test_range  (" Range class works correctly. ").
biodb.INFO [2022-01-20 16:42:04.060][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:04.060][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:04.185][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:04.185][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 16:42:04.201][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:04.201][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 16:42:04.201][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 16:42:04.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.216][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 16:42:04.216][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 16:42:04.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.216][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 16:42:04.216][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 16:42:04.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.232][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 16:42:04.232][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 16:42:04.232][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 16:42:04.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.247][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 16:42:04.247][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 16:42:04.247][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 16:42:04.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.247][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 16:42:04.247][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 16:42:04.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.263][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 16:42:04.279][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 16:42:04.279][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 16:42:04.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.279][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 16:42:04.294][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 16:42:04.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.294][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 16:42:04.294][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 16:42:04.294][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 16:42:04.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.310][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:04.310][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 16:42:04.310][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 16:42:04.310][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 16:42:04.310][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 16:42:04.310][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 16:42:04.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.326][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 16:42:04.326][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 16:42:04.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.326][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 16:42:04.326][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 16:42:04.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.341][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 16:42:04.341][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 16:42:04.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.341][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 16:42:04.341][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 16:42:04.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.357][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 16:42:04.357][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 16:42:04.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.357][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:04.372][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 16:42:04.372][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-20 16:42:04.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.372][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 16:42:04.372][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 16:42:04.372][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 16:42:04.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.388][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:04.388][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.388][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 16:42:04.388][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:04.388][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.404][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.404][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.404][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.404][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:04.404][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:04.404][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.404][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 16:42:04.404][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:04.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:04.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:04.419][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.435][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.591][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:04.591][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:04.591][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.591][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.607][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.607][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:04.622][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:04.622][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:04.638][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:04.638][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:04.638][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.638][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.638][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:04.638][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:04.638][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.638][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.638][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:04.638][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.638][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.654][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:04.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:04.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.669][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:04.685][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.685][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.685][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:04.701][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:04.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:04.716][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:04.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:04.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:04.716][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:04.716][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.716][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:04.716][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:04.716][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:04.716][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:04.716][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:04.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:04.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:04.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:04.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:04.826][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 16:42:04.826][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 16:42:04.841][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 16:42:04.857][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 16:42:04.873][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 16:42:04.888][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 16:42:04.904][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 16:42:04.919][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 16:42:04.935][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 16:42:04.951][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 16:42:04.951][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 16:42:04.951][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 16:42:04.951][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 16:42:04.951][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 16:42:04.951][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 16:42:04.951][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 16:42:04.966][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 16:42:04.966][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 16:42:04.966][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 16:42:04.966][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 16:42:04.966][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 16:42:04.966][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 16:42:04.966][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 16:42:04.966][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 16:42:04.982][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 16:42:04.982][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 16:42:04.982][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 16:42:04.982][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-20 16:42:04.982][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:04.982][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:04.982][biodb::testContext] Test context - Test object printing.
biodb.INFO [2022-01-20 16:42:04.982][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:04.997][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:04.997][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:04.997][biodb::testThat] Running test function  test.BiodbMain.print  (" BiodbMain print method returns correct information. ").
biodb.INFO [2022-01-20 16:42:04.997][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:04.997][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.013][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.013][biodb::testThat] Running test function  test.BiodbCache.print  (" BiodbCache print method returns correct information. ").
biodb.INFO [2022-01-20 16:42:05.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:05.013][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.029][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.029][biodb::testThat] Running test function  test.BiodbConfig.print  (" BiodbConfig print method returns correct information. ").
biodb.INFO [2022-01-20 16:42:05.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:05.029][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.029][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.029][biodb::testThat] Running test function  test.BiodbFactory.print  (" BiodbFactory print method returns correct information. ").
biodb.INFO [2022-01-20 16:42:05.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:05.044][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.044][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.044][biodb::testThat] Running test function  test.BiodbEntry.print  (" BiodbEntry print method returns correct information. ").
biodb.INFO [2022-01-20 16:42:05.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:05.044][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:05.060][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:05.060][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-01-20 16:42:05.076][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2022-01-20 16:42:05.076][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2022-01-20 16:42:05.076][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-01-20 16:42:05.076][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:05.076][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:05.076][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2022-01-20 16:42:05.091][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-20 16:42:05.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.107][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.154][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2022-01-20 16:42:05.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-20 16:42:05.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-20 16:42:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.154][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.154][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.169][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.169][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.169][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.169][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2022-01-20 16:42:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.169][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.169][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.169][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2022-01-20 16:42:05.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-20 16:42:05.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:05.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.185][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-01-20 16:42:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.201][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:05.247][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2022-01-20 16:42:05.263][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2022-01-20 16:42:05.263][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2022-01-20 16:42:05.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:05.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:05.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:05.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:05.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.279][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:05.294][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2022-01-20 16:42:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-20 16:42:05.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-20 16:42:05.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-20 16:42:05.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-20 16:42:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.607][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.607][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:05.607][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-20 16:42:05.607][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-20 16:42:05.607][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-20 16:42:05.607][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.623][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.638][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.654][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.654][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.669][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.669][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-20 16:42:05.669][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.685][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.701][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.701][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.701][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2022-01-20 16:42:05.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:05.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:05.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:05.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:05.873][self$createEntryFromContent] Accession numbers: C1.
biodb.INFO [2022-01-20 16:42:05.888][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-01-20 16:42:05.888][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:05.888][biodb::testThat] Running test function  test.BiodbConn.print  (" BiodbConn print method returns correct information. ").
biodb.INFO [2022-01-20 16:42:05.888][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:05.888][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:05.951][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:05.966][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-01-20 16:42:06.044][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.044][biodb::testThat] Running test function  test.BiodbDbsInfo.print  (" BiodbDbsInfo print method returns correct information. ").
biodb.INFO [2022-01-20 16:42:06.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.044][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.044][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.044][biodb::testThat] Running test function  test.BiodbEntryFields.print  (" BiodbEntryFields print method returns correct information. ").
biodb.INFO [2022-01-20 16:42:06.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.044][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.060][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-01-20 16:42:06.060][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-01-20 16:42:06.060][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-20 16:42:06.060][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.060][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 16:42:06.060][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:06.060][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:06.076][biodb::testContext] Test context - Testing mass functions
biodb.INFO [2022-01-20 16:42:06.076][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:06.076][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:06.076][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.076][biodb::testThat] Running test function  test_convertTolToRange  (" Conversion from tolerance to range works correctly. ").
biodb.INFO [2022-01-20 16:42:06.076][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.076][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.091][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.091][biodb::testThat] Running test function  test_closeMatchPpm  (" closeMatchPpm() works correctly. ").
biodb.INFO [2022-01-20 16:42:06.091][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.091][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.107][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:06.107][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:06.107][biodb::testContext] Test context - Testing biodb functions
biodb.INFO [2022-01-20 16:42:06.107][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:06.107][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:06.107][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.123][biodb::testThat] Running test function  test_connNameToClassPrefix  (" We can convert a connector name into a class prefix. ").
biodb.INFO [2022-01-20 16:42:06.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.123][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.123][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.123][biodb::testThat] Running test function  test_extractVersion  (" We can extract the version number from a template file. ").
biodb.INFO [2022-01-20 16:42:06.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.123][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.138][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:06.138][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:06.138][biodb::testContext] Test context - Testing miscellaneous functions
biodb.INFO [2022-01-20 16:42:06.138][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:06.138][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:06.138][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.138][biodb::testThat] Running test function  test_splitVersion  (" We can split version string. ").
biodb.INFO [2022-01-20 16:42:06.138][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.138][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.154][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.154][biodb::testThat] Running test function  test_compareVersions  (" We can compare string versions. ").
biodb.INFO [2022-01-20 16:42:06.154][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.154][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.185][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:06.185][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 16:42:06.185][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:06.185][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 16:42:06.185][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 16:42:06.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.201][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 16:42:06.201][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 16:42:06.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.201][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 16:42:06.201][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 16:42:06.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.201][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 16:42:06.201][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 16:42:06.201][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 16:42:06.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.216][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 16:42:06.216][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 16:42:06.216][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 16:42:06.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.216][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 16:42:06.216][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 16:42:06.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.216][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 16:42:06.216][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 16:42:06.216][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 16:42:06.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.232][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 16:42:06.232][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 16:42:06.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.232][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 16:42:06.232][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 16:42:06.232][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 16:42:06.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.232][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:06.232][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 16:42:06.232][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 16:42:06.248][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 16:42:06.248][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 16:42:06.248][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 16:42:06.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.248][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 16:42:06.248][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 16:42:06.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.248][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 16:42:06.248][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 16:42:06.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.263][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 16:42:06.263][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 16:42:06.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.263][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 16:42:06.263][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 16:42:06.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.263][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 16:42:06.263][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 16:42:06.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.279][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:06.279][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 16:42:06.279][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-20 16:42:06.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.279][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 16:42:06.279][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 16:42:06.279][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 16:42:06.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.279][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:06.279][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:06.294][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:06.310][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:06.310][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:06.310][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.310][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 16:42:06.310][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.326][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:06.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:06.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:06.341][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.341][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:06.341][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.357][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:06.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:06.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:06.373][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.373][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.373][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:06.388][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:06.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:06.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:06.404][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:06.404][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:06.419][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:06.419][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.498][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 16:42:06.498][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 16:42:06.513][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 16:42:06.529][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 16:42:06.544][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 16:42:06.560][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 16:42:06.576][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 16:42:06.591][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 16:42:06.607][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 16:42:06.623][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 16:42:06.623][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 16:42:06.623][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 16:42:06.623][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 16:42:06.623][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 16:42:06.623][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 16:42:06.623][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 16:42:06.623][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 16:42:06.623][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-20 16:42:06.623][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:06.638][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:06.638][biodb::testContext] Test context - Test messages.
biodb.INFO [2022-01-20 16:42:06.638][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:06.638][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:06.638][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:06.638][biodb::testThat] Running test function  test.deprecatedMethods  (" Deprecated methods send correct message. ").
biodb.INFO [2022-01-20 16:42:06.638][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:06.638][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:06.638][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:06.638][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-01-20 16:42:06.654][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2022-01-20 16:42:06.654][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2022-01-20 16:42:06.654][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-01-20 16:42:06.654][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:06.654][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:06.654][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2022-01-20 16:42:06.654][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-20 16:42:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:06.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:06.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:06.654][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.669][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2022-01-20 16:42:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-20 16:42:06.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-20 16:42:06.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:06.669][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.669][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.669][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:06.685][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.685][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.685][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.685][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:06.685][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.685][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.685][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.685][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.685][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:06.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.701][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-01-20 16:42:06.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:06.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.716][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:06.716][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2022-01-20 16:42:06.732][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2022-01-20 16:42:06.732][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2022-01-20 16:42:06.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:06.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:06.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:06.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:06.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:06.748][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2022-01-20 16:42:06.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:06.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-20 16:42:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-20 16:42:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-20 16:42:06.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-20 16:42:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:06.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:06.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.966][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:06.966][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-20 16:42:06.966][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-20 16:42:06.966][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-20 16:42:06.966][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:06.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:06.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.966][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.966][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:06.998][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.013][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.013][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.029][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-20 16:42:07.029][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.029][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.044][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.044][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.044][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.044][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.044][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.044][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2022-01-20 16:42:07.044][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.044][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:07.185][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2022-01-20 16:42:07.216][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-20 16:42:07.216][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:07.216][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:07.232][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-20 16:42:07.232][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-20 16:42:07.232][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:07.232][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:07.248][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-20 16:42:07.248][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-20 16:42:07.248][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:07.248][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.WARN [2022-01-20 16:42:07.263][self$searchForEntries] This database is not searchable by field "name".
biodb.TRACE[2022-01-20 16:42:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:07.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:07.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:07.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:07.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-20 16:42:07.279][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-01-20 16:42:07.294][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:07.294][biodb::testThat] Running test function  test.default.messages  (" Test what messages are printed by default. ").
biodb.INFO [2022-01-20 16:42:07.294][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:07.294][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:07.326][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-20 16:42:07.326][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-20 16:42:07.326][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.326][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 16:42:07.341][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:07.341][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 16:42:07.341][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:07.341][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 16:42:07.341][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.357][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 16:42:07.357][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.357][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 16:42:07.357][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.357][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 16:42:07.357][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 16:42:07.357][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 16:42:07.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.373][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 16:42:07.373][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 16:42:07.373][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.373][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 16:42:07.373][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 16:42:07.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.373][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 16:42:07.373][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 16:42:07.373][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 16:42:07.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.388][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 16:42:07.388][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.388][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 16:42:07.388][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 16:42:07.388][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.388][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:07.404][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 16:42:07.404][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 16:42:07.404][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 16:42:07.404][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 16:42:07.404][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 16:42:07.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.404][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 16:42:07.404][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 16:42:07.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.404][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 16:42:07.419][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 16:42:07.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.419][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 16:42:07.419][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 16:42:07.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.419][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 16:42:07.419][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 16:42:07.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.419][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 16:42:07.419][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 16:42:07.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.435][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:07.435][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 16:42:07.435][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-20 16:42:07.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.435][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 16:42:07.435][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 16:42:07.435][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 16:42:07.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.451][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:07.466][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.466][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 16:42:07.466][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:07.482][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:07.498][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.498][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.498][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:07.513][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:07.529][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.529][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.529][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.544][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.560][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.560][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:07.560][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.560][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 16:42:07.560][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:07.576][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.591][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.591][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:07.591][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.591][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.607][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.685][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 16:42:07.701][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 16:42:07.716][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 16:42:07.732][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 16:42:07.748][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 16:42:07.763][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 16:42:07.779][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 16:42:07.794][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 16:42:07.810][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 16:42:07.810][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 16:42:07.810][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 16:42:07.810][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 16:42:07.810][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 16:42:07.810][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 16:42:07.810][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-20 16:42:07.810][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:07.810][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:07.810][biodb::testContext] Test context - Test config.
biodb.INFO [2022-01-20 16:42:07.826][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:07.826][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:07.826][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:07.826][biodb::testThat] Running test function  test.listKeys  (" Keys are listed correctly. ").
biodb.INFO [2022-01-20 16:42:07.826][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:07.826][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:07.841][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-20 16:42:07.841][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-20 16:42:07.841][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:07.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:07.841][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 16:42:07.841][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:07.841][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:07.841][biodb::testContext] Test context - Test persistent cache.
biodb.INFO [2022-01-20 16:42:07.841][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:07.857][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:07.857][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:07.857][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 16:42:07.857][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:07.857][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 16:42:07.873][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.873][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 16:42:07.873][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.873][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 16:42:07.873][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.873][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 16:42:07.873][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 16:42:07.888][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 16:42:07.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.888][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 16:42:07.888][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 16:42:07.888][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.888][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 16:42:07.888][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 16:42:07.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.888][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 16:42:07.904][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 16:42:07.904][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 16:42:07.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.904][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 16:42:07.904][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.904][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 16:42:07.904][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 16:42:07.904][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 16:42:07.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.919][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:07.919][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 16:42:07.919][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 16:42:07.919][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 16:42:07.919][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 16:42:07.919][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 16:42:07.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.919][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 16:42:07.919][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 16:42:07.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.919][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 16:42:07.935][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 16:42:07.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.935][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 16:42:07.935][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 16:42:07.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.935][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 16:42:07.935][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 16:42:07.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.935][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 16:42:07.935][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 16:42:07.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.951][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:07.951][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 16:42:07.951][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-20 16:42:07.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.951][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 16:42:07.951][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 16:42:07.951][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 16:42:07.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:07.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:07.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:07.966][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 16:42:07.966][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:07.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:07.982][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.982][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:07.998][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 16:42:07.998][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:08.013][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:08.013][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:08.013][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:08.013][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.029][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:08.029][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:08.044][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:08.044][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:08.044][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:08.060][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.060][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:08.060][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:08.076][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:08.076][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:08.076][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:08.091][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.091][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:08.091][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:08.091][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:08.091][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:08.091][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:08.091][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 16:42:08.185][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 16:42:08.201][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 16:42:08.216][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 16:42:08.232][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 16:42:08.248][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 16:42:08.263][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 16:42:08.279][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 16:42:08.294][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 16:42:08.294][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 16:42:08.310][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:08.310][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2022-01-20 16:42:08.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:08.310][biodb$getConfig()$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 16:42:08.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:08.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:08.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:08.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:08.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 16:42:08.326][biodb$getPersistentCache()$erase] Erasing cache "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb".
biodb.DEBUG[2022-01-20 16:42:14.669][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:14.669][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-01-20 16:42:14.669][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:14.669][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2022-01-20 16:42:14.685][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:14.685][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:14.685][private$initDb] Loading file database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:14.685][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-20 16:42:14.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:14.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:14.701][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.701][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-20 16:42:14.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:14.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:14.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:14.716][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.716][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.716][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:14.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:14.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:14.732][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.732][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.732][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.732][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-01-20 16:42:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:14.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:14.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.748][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.748][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:14.748][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:14.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:14.763][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.763][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.763][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.763][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.763][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.763][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-01-20 16:42:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:14.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:14.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2022-01-20 16:42:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:14.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.779][self$setField] Set field description to column(s) description.
biodb.TRACE[2022-01-20 16:42:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:14.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:14.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:14.794][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.794][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.794][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.794][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.794][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.794][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.794][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.794][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.INFO [2022-01-20 16:42:14.810][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.DEBUG[2022-01-20 16:42:14.810][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8 using pattern ^.*\.tsv$.
biodb.DEBUG[2022-01-20 16:42:14.826][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-20 16:42:14.826][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 16:42:14.826][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-20 16:42:14.826][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-20 16:42:14.826][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 16:42:14.826][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 16:42:14.841][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:14.841][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:14.841][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:14.841][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-20 16:42:14.857][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-01-20 16:42:14.904][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1390.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1456.tsv"
biodb.DEBUG[2022-01-20 16:42:14.904][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 16:42:14.935][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:14.935][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-20 16:42:14.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:14.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:14.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:14.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:14.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.951][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:14.966][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2022-01-20 16:42:14.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:14.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:14.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:14.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:14.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:14.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:15.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.076][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.138][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.138][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:15.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:15.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:15.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:15.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:15.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:15.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:15.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:15.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:15.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:15.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:15.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:15.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:15.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:15.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:15.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.326][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.326][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:15.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:15.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:15.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:15.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:15.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:15.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:15.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:15.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.513][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:15.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:15.607][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2022-01-20 16:42:15.623][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8 using pattern ^.*\.tsv$.
biodb.DEBUG[2022-01-20 16:42:15.638][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8 using pattern ^.*\.tsv$.
biodb.DEBUG[2022-01-20 16:42:15.638][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-0bf304f9c04eab97a915c662d46af8b8 using pattern ^(.*)\.tsv$
biodb.DEBUG[2022-01-20 16:42:15.638][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2022-01-20 16:42:15.638][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:15.638][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2022-01-20 16:42:15.638][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:15.638][biodb::testThat] 
biodb.WARN [2022-01-20 16:42:15.654][self$getFolderPath] No cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2022-01-20 16:42:15.654][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:15.654][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2022-01-20 16:42:15.654][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:15.654][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:15.654][cache$deleteAllFiles] Erasing all files in "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:15.669][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:15.669][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:15.669][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2022-01-20 16:42:15.669][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:15.669][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:15.669][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/foo-1234567890abcdef01234" for "foo-1234567890abcdef01234".
biodb.INFO [2022-01-20 16:42:15.685][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:15.685][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2022-01-20 16:42:15.685][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:15.685][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:15.716][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-20 16:42:15.763][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 16:42:15.779][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-20 16:42:15.779][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-20 16:42:15.794][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 16:42:15.794][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 16:42:15.794][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:15.794][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:15.794][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:15.794][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-20 16:42:15.794][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-01-20 16:42:15.826][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1390.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1456.tsv"
biodb.DEBUG[2022-01-20 16:42:15.826][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 16:42:15.873][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:15.873][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-20 16:42:15.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:15.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:15.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:15.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:15.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:15.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:15.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:15.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:15.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:15.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:15.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:15.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:15.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:15.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:15.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:15.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:15.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:15.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:16.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:16.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:16.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:16.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:16.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.154][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.154][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:16.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:16.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:16.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:16.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:16.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:16.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.326][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.326][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:16.419][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-20 16:42:16.435][cache$deleteAllFiles] Erasing all files in "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:16.435][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:16.435][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2022-01-20 16:42:16.435][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:16.435][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:16.451][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-20 16:42:16.451][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 16:42:16.451][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.INFO [2022-01-20 16:42:16.451][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.TRACE[2022-01-20 16:42:16.451][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-20 16:42:16.451][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 16:42:16.451][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 16:42:16.451][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:16.451][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:16.466][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:16.466][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-20 16:42:16.466][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-01-20 16:42:16.482][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1390.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1456.tsv"
biodb.DEBUG[2022-01-20 16:42:16.482][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 16:42:16.498][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:16.498][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-20 16:42:16.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:16.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:16.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:16.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:16.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:16.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:16.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:16.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:16.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:16.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:16.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:16.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:16.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:16.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:16.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:16.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:16.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:16.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:17.013][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-20 16:42:17.013][cache$deleteAllFiles] Erasing all files in "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:17.013][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.DEBUG[2022-01-20 16:42:17.013][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-20 16:42:17.013][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 16:42:17.029][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-20 16:42:17.029][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-20 16:42:17.029][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 16:42:17.029][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 16:42:17.029][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:17.029][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:17.029][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:17.029][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-20 16:42:17.044][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-01-20 16:42:17.044][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1018.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1390.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8/1456.tsv"
biodb.DEBUG[2022-01-20 16:42:17.060][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 16:42:17.060][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:17.060][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-20 16:42:17.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:17.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:17.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:17.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:17.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:17.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:17.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:17.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.216][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:17.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.232][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:17.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:17.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:17.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:17.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:17.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:17.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:17.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:17.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:17.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:17.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:17.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:17.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:17.654][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-20 16:42:17.669][cache$deleteAllFiles] Erasing all files in "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:17.669][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:17.669][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-01-20 16:42:17.685][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-01-20 16:42:17.685][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-20 16:42:17.685][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.685][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 16:42:17.685][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:17.701][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 16:42:17.701][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:17.701][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 16:42:17.701][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 16:42:17.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.716][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 16:42:17.716][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 16:42:17.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.716][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 16:42:17.716][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 16:42:17.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.732][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 16:42:17.732][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 16:42:17.732][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 16:42:17.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.732][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 16:42:17.732][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 16:42:17.732][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 16:42:17.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.732][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 16:42:17.748][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 16:42:17.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.748][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 16:42:17.748][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 16:42:17.748][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 16:42:17.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.748][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 16:42:17.748][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 16:42:17.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.763][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 16:42:17.763][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 16:42:17.763][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 16:42:17.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.763][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:17.763][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 16:42:17.763][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 16:42:17.763][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 16:42:17.763][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 16:42:17.763][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 16:42:17.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.779][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 16:42:17.779][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 16:42:17.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.779][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 16:42:17.779][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 16:42:17.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.779][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 16:42:17.779][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 16:42:17.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.779][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 16:42:17.794][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 16:42:17.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.794][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 16:42:17.794][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 16:42:17.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.794][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:17.794][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 16:42:17.794][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-20 16:42:17.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.810][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 16:42:17.810][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 16:42:17.810][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 16:42:17.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.810][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:17.841][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:17.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:17.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.857][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:17.873][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.873][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:17.873][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:17.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:17.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.888][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:17.904][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.904][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.904][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:17.919][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:17.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:17.919][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:17.935][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.935][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.935][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:17.951][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:17.951][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:17.966][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:17.966][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:17.966][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.966][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:17.966][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:17.966][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:17.966][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:17.966][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:17.966][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:17.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:17.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:18.060][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 16:42:18.076][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 16:42:18.091][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 16:42:18.107][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 16:42:18.107][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 16:42:18.107][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 16:42:18.107][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 16:42:18.107][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 16:42:18.107][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 16:42:18.107][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 16:42:18.107][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 16:42:18.123][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 16:42:18.138][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 16:42:18.154][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 16:42:18.169][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 16:42:18.185][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 16:42:18.185][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 16:42:18.185][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 16:42:18.185][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 16:42:18.185][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 16:42:18.185][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 16:42:18.185][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:18.185][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2022-01-20 16:42:18.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:18.201][biodb$getConfig()$set] Set key persistent.cache.impl to "bioc".
biodb.DEBUG[2022-01-20 16:42:18.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:18.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:18.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:18.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:18.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 16:42:18.201][biodb$getPersistentCache()$erase] Erasing cache "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb".
biodb.DEBUG[2022-01-20 16:42:18.216][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:18.216][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-01-20 16:42:18.216][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:18.216][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2022-01-20 16:42:18.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:18.216][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:18.232][private$initDb] Loading file database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:18.232][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-20 16:42:18.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:18.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:18.248][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:18.248][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:18.248][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:18.248][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:18.248][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:18.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-01-20 16:42:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:18.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:18.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:18.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:18.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:18.263][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-01-20 16:42:18.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:18.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:18.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:18.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2022-01-20 16:42:18.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:18.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:18.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:18.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:18.279][self$setField] Set field description to column(s) description.
biodb.TRACE[2022-01-20 16:42:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:18.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:18.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:18.294][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:18.294][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:18.294][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:18.294][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:18.294][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:18.294][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:18.294][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:18.294][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:18.310][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-20 16:42:18.310][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 16:42:18.310][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-20 16:42:18.310][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-20 16:42:18.310][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 16:42:18.310][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 16:42:18.310][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:18.310][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:18.310][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:18.310][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-20 16:42:18.326][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-01-20 16:42:18.326][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.DEBUG[2022-01-20 16:42:19.138][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 16:42:19.154][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:19.154][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-20 16:42:19.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:19.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:19.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:19.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:19.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-20 16:42:19.169][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2022-01-20 16:42:19.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:19.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:19.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:19.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:19.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:19.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:19.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:19.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:19.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:19.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:19.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:19.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:19.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:19.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:19.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:19.669][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2022-01-20 16:42:20.076][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-0bf304f9c04eab97a915c662d46af8b8 using pattern ^(.*)\.tsv$
biodb.DEBUG[2022-01-20 16:42:20.076][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2022-01-20 16:42:20.076][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:20.076][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2022-01-20 16:42:20.076][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:20.091][biodb::testThat] 
biodb.WARN [2022-01-20 16:42:20.091][self$getFolderPath] No cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2022-01-20 16:42:20.091][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:20.091][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2022-01-20 16:42:20.091][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:20.091][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:20.279][cache$deleteAllFiles] Erasing all files in "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:20.294][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:20.294][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2022-01-20 16:42:20.294][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:20.294][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:20.294][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:20.294][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2022-01-20 16:42:20.294][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:20.294][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:20.310][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-20 16:42:20.310][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 16:42:20.310][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-20 16:42:20.310][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-20 16:42:20.310][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 16:42:20.310][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 16:42:20.310][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:20.310][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:20.310][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:20.310][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-20 16:42:20.326][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-01-20 16:42:20.326][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.DEBUG[2022-01-20 16:42:21.029][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 16:42:21.044][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:21.044][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-20 16:42:21.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:21.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:21.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:21.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:21.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:21.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:21.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:21.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:21.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:21.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:21.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:21.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:21.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:21.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:21.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:21.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:21.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:21.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:21.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:21.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:21.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:21.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:21.529][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-20 16:42:21.529][cache$deleteAllFiles] Erasing all files in "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:21.544][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:21.544][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2022-01-20 16:42:21.544][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:21.544][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:21.544][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-20 16:42:21.544][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 16:42:21.544][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-20 16:42:21.544][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-20 16:42:21.544][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 16:42:21.544][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 16:42:21.544][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:21.560][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:21.560][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:21.560][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-20 16:42:21.560][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-01-20 16:42:21.560][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.DEBUG[2022-01-20 16:42:22.341][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 16:42:22.357][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:22.357][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-20 16:42:22.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:22.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:22.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:22.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:22.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:22.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:22.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:22.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:22.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:22.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:22.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.544][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:22.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:22.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:22.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:22.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:22.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:22.794][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-20 16:42:22.966][cache$deleteAllFiles] Erasing all files in "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.DEBUG[2022-01-20 16:42:22.966][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-20 16:42:22.966][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 16:42:22.966][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-20 16:42:22.966][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-20 16:42:22.966][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 16:42:22.966][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 16:42:22.966][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-20 16:42:22.966][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:22.966][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:22.966][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-20 16:42:22.982][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-01-20 16:42:22.982][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8" for "comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.DEBUG[2022-01-20 16:42:23.623][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 16:42:23.638][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:23.638][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-20 16:42:23.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:23.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:23.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:23.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:23.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:23.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:23.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:23.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:23.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:23.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:23.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:23.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:23.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:23.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:23.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:23.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:23.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:23.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:23.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 16:42:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:23.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-20 16:42:23.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:23.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:24.076][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-20 16:42:24.232][cache$deleteAllFiles] Erasing all files in "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/comp.csv.file-0bf304f9c04eab97a915c662d46af8b8".
biodb.INFO [2022-01-20 16:42:24.248][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-01-20 16:42:24.248][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-01-20 16:42:24.248][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-20 16:42:24.248][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.248][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 16:42:24.263][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 16:42:24.263][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 16:42:24.263][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:24.263][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 16:42:24.263][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 16:42:24.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.279][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 16:42:24.279][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 16:42:24.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.279][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 16:42:24.279][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 16:42:24.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.279][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 16:42:24.279][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 16:42:24.279][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 16:42:24.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.294][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 16:42:24.294][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 16:42:24.294][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 16:42:24.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.294][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 16:42:24.294][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 16:42:24.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.294][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 16:42:24.294][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 16:42:24.294][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 16:42:24.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.310][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 16:42:24.310][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 16:42:24.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.310][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 16:42:24.310][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 16:42:24.310][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 16:42:24.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.310][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:24.310][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 16:42:24.310][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 16:42:24.326][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 16:42:24.326][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 16:42:24.326][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 16:42:24.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.326][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 16:42:24.326][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 16:42:24.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.326][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 16:42:24.326][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 16:42:24.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.341][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 16:42:24.341][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 16:42:24.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.341][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 16:42:24.341][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 16:42:24.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.341][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 16:42:24.341][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 16:42:24.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.341][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 16:42:24.357][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 16:42:24.357][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-20 16:42:24.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.357][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 16:42:24.357][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 16:42:24.357][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 16:42:24.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.357][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:24.388][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:24.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:24.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.404][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:24.419][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.419][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.419][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:24.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:24.435][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:24.451][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:24.451][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.451][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:24.451][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:24.466][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:24.466][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:24.482][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:24.482][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.482][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.482][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:24.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 16:42:24.498][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 16:42:24.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 16:42:24.513][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 16:42:24.513][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.513][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 16:42:24.513][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 16:42:24.513][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 16:42:24.513][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 16:42:24.513][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 16:42:24.513][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.591][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 16:42:24.591][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 16:42:24.591][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 16:42:24.607][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 16:42:24.623][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 16:42:24.638][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 16:42:24.654][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 16:42:24.669][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 16:42:24.685][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 16:42:24.701][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 16:42:24.716][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 16:42:24.716][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 16:42:24.716][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 16:42:24.716][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-20 16:42:24.716][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:24.716][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:24.716][biodb::testContext] Test context - Test BiodbMain instance.
biodb.INFO [2022-01-20 16:42:24.716][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 16:42:24.716][biodb::testContext] 
biodb.INFO [2022-01-20 16:42:24.716][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:24.716][biodb::testThat] Running test function  test.convertEntryIdFieldToDbClass  (" convertEntryIdFieldToDbClass() works correctly. ").
biodb.INFO [2022-01-20 16:42:24.716][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:24.732][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:24.732][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:24.732][biodb::testThat] Running test function  test.collapseRows  (" collapseRows() works correctly. ").
biodb.INFO [2022-01-20 16:42:24.732][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:24.748][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:24.794][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:24.794][biodb::testThat] Running test function  test.entriesToDataframe  (" entriesToDataframe() works correctly. ").
biodb.INFO [2022-01-20 16:42:24.794][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:24.794][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:24.794][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:24.794][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-01-20 16:42:24.810][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-20 16:42:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:24.810][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:24.810][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-20 16:42:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:24.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:24.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:24.810][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:24.810][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:24.810][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2022-01-20 16:42:24.826][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:24.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:24.826][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:24.826][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:24.826][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-20 16:42:24.826][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2022-01-20 16:42:24.826][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2022-01-20 16:42:24.826][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-01-20 16:42:24.826][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:24.826][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:24.826][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2022-01-20 16:42:24.841][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2022-01-20 16:42:24.841][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:24.841][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2022-01-20 16:42:24.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:24.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:24.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:24.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:24.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:24.857][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2022-01-20 16:42:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.904][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:24.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:24.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:24.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.982][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:24.982][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-20 16:42:24.982][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-20 16:42:24.982][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.982][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:24.998][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:24.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.998][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.998][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:24.998][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:24.998][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-20 16:42:24.998][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-20 16:42:24.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:24.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:24.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:24.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:24.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:25.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.169][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:25.169][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-20 16:42:25.169][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.169][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.169][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.185][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:25.185][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:25.185][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-20 16:42:25.185][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:25.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.263][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.263][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.326][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:25.341][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-20 16:42:25.341][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.341][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.341][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.357][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:25.357][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:25.357][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-20 16:42:25.357][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:25.435][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2022-01-20 16:42:25.466][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 16:42:25.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.529][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.529][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:25.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.529][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.529][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.529][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.529][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.529][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.529][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.544][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.544][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.544][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.544][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.560][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.560][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2022-01-20 16:42:25.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.576][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.591][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:25.591][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.591][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.591][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.591][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.591][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.591][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.591][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.591][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.607][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.607][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2022-01-20 16:42:25.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.638][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.638][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:25.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.638][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.638][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.638][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.638][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.638][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.638][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.654][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.654][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.654][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.654][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-20 16:42:25.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.669][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2022-01-20 16:42:25.669][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 16:42:25.669][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-01-20 16:42:25.669][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 16:42:25.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.716][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.716][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:25.716][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.716][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.716][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.716][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.716][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.716][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.716][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.732][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.732][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.732][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.732][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.732][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-20 16:42:25.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2022-01-20 16:42:25.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.763][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.763][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:25.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.763][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.763][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.763][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.763][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.779][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.779][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.779][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.779][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.779][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.779][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-20 16:42:25.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2022-01-20 16:42:25.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.810][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.810][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:25.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.810][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.810][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.810][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.810][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.826][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.826][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.826][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-20 16:42:25.826][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.826][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.826][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-20 16:42:25.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.841][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2022-01-20 16:42:25.841][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 16:42:25.841][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-01-20 16:42:25.841][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 16:42:25.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.873][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:25.873][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:25.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.873][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.904][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:25.904][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.904][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.904][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-01-20 16:42:25.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A1, C3H10N2].
biodb.DEBUG[2022-01-20 16:42:25.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:25.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:25.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:25.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:25.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.966][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:25.966][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:25.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:25.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:25.966][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:25.966][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.966][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.966][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.966][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.982][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:25.982][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.982][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:25.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:25.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.998][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.998][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A2, C6H12O6].
biodb.DEBUG[2022-01-20 16:42:26.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:26.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:26.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:26.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:26.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:26.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.044][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:26.044][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:26.044][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:26.044][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:26.044][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.076][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:26.076][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.076][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.076][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-01-20 16:42:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A3, C6H8O7].
biodb.DEBUG[2022-01-20 16:42:26.107][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 16:42:26.107][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-01-20 16:42:26.107][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 16:42:26.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:26.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:26.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:26.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:26.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.123][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.123][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:26.123][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:26.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:26.123][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.123][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.138][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.138][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.138][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.138][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.138][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.138][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.138][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.138][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-01-20 16:42:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [80].
biodb.DEBUG[2022-01-20 16:42:26.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:26.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:26.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:26.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:26.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.169][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.169][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.169][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:26.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:26.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:26.169][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.169][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.169][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.169][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.169][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.169][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.185][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.185][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.185][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.185][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.201][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [90].
biodb.DEBUG[2022-01-20 16:42:26.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:26.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:26.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:26.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:26.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:26.201][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.201][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.201][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.201][private$selectFields] 
biodb.TRACE[2022-01-20 16:42:26.216][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 16:42:26.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 16:42:26.216][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.216][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.216][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.216][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.216][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.216][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-20 16:42:26.216][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.216][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.216][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.216][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-01-20 16:42:26.216][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [100;110].
biodb.DEBUG[2022-01-20 16:42:26.232][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 16:42:26.232][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2022-01-20 16:42:26.232][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-01-20 16:42:26.248][biodb::testThat] 
biodb.INFO [2022-01-20 16:42:26.248][biodb::testThat] Running test function  test.entriesToDataframe.listOfListInput  (" entriesToDataframe() handles list of list in input. ").
biodb.INFO [2022-01-20 16:42:26.248][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 16:42:26.248][biodb::testThat] 
biodb.DEBUG[2022-01-20 16:42:26.248][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-01-20 16:42:26.248][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-01-20 16:42:26.248][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-20 16:42:26.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:26.263][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:26.263][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-20 16:42:26.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:26.263][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:26.263][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:26.294][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2022-01-20 16:42:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:26.294][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:26.294][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:26.294][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-20 16:42:26.294][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2022-01-20 16:42:26.294][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2022-01-20 16:42:26.294][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-01-20 16:42:26.294][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 16:42:26.294][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 16:42:26.294][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2022-01-20 16:42:26.310][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2022-01-20 16:42:26.310][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-20 16:42:26.310][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2022-01-20 16:42:26.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:26.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:26.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:26.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:26.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-20 16:42:26.326][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2022-01-20 16:42:26.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.435][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:26.435][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-20 16:42:26.435][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-20 16:42:26.435][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-20 16:42:26.435][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.451][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.451][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:26.451][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:26.451][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-20 16:42:26.451][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-20 16:42:26.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:26.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:26.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:26.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:26.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:26.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:26.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.607][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 16:42:26.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.607][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:26.607][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-20 16:42:26.607][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-20 16:42:26.607][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-20 16:42:26.607][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.607][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.623][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.623][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.623][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.623][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.623][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:26.623][private$selectFields] Fields none
biodb.TRACE[2022-01-20 16:42:26.623][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-20 16:42:26.623][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-20 16:42:26.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:26.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 16:42:26.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 16:42:26.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 16:42:26.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 16:42:26.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 16:42:26.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-20 16:42:26.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 16:42:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 16:42:26.732