Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-26 13:05:08 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodb on nebbiolo2


To the developers/maintainers of the biodb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 175/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodb 1.2.2  (landing page)
Pierrick Roger
Snapshot Date: 2022-01-25 01:55:07 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/biodb
git_branch: RELEASE_3_14
git_last_commit: 79469df
git_last_commit_date: 2021-12-10 12:32:56 -0500 (Fri, 10 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodb
Version: 1.2.2
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:biodb.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings biodb_1.2.2.tar.gz
StartedAt: 2022-01-25 06:35:12 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 06:38:34 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 201.9 seconds
RetCode: 0
Status:   OK  
CheckDir: biodb.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:biodb.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings biodb_1.2.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodb/DESCRIPTION’ ... OK
* this is package ‘biodb’ version ‘1.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodb’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.7Mb
  sub-directories of 1Mb or more:
    R      2.1Mb
    libs   9.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck/00check.log’
for details.



Installation output

biodb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL biodb
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘biodb’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/testthat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/testthat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c closeMatchPpm.cpp -o closeMatchPpm.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/testthat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c test-100-ms_matching.cpp -o test-100-ms_matching.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/testthat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o biodb.so RcppExports.o closeMatchPpm.o test-100-ms_matching.o test-runner.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-biodb/00new/biodb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodb)

Tests output

biodb.Rcheck/tests/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodb")
biodb.INFO [2022-01-25 06:36:27.209][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:27.212][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-25 06:36:27.217][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:27.218][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-25 06:36:27.220][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-25 06:36:27.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.224][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-25 06:36:27.275][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-25 06:36:27.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.280][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-25 06:36:27.281][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-25 06:36:27.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.285][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-25 06:36:27.286][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-25 06:36:27.287][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-25 06:36:27.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.291][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-25 06:36:27.292][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-25 06:36:27.293][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-25 06:36:27.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.297][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-25 06:36:27.298][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-25 06:36:27.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.302][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-25 06:36:27.303][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-25 06:36:27.304][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-25 06:36:27.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.308][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-25 06:36:27.310][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-25 06:36:27.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.314][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-25 06:36:27.315][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-25 06:36:27.316][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-25 06:36:27.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.320][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:27.321][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-25 06:36:27.322][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-25 06:36:27.323][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-25 06:36:27.325][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-25 06:36:27.326][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-25 06:36:27.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.330][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-25 06:36:27.331][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-25 06:36:27.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.335][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-25 06:36:27.336][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-25 06:36:27.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.341][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-25 06:36:27.342][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-25 06:36:27.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.346][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-25 06:36:27.347][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-25 06:36:27.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.351][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-25 06:36:27.353][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-25 06:36:27.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.357][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:27.358][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-25 06:36:27.363][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-01-25 06:36:27.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.367][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-25 06:36:27.368][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-25 06:36:27.369][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-25 06:36:27.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.374][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:27.404][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.422][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-25 06:36:27.423][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.424][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:27.425][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.426][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.428][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.429][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.430][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:27.431][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:27.432][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.433][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-25 06:36:27.434][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:27.435][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.436][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.437][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:27.437][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:27.437][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:27.437][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:27.437][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:27.438][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:27.439][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:27.440][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:27.441][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:27.442][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:27.443][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:27.445][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.446][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.447][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:27.448][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:27.449][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.450][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.451][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-25 06:36:27.453][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.454][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:27.456][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.457][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:27.458][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.459][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.460][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.460][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.461][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:27.462][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:27.463][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.464][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-25 06:36:27.465][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:27.466][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.467][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.468][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:27.468][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:27.468][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:27.468][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:27.468][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:27.469][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:27.470][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:27.471][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:27.472][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:27.473][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:27.474][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:27.475][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.476][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.482][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:27.483][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:27.484][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.485][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.487][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:27.489][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.490][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-25 06:36:27.491][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.492][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:27.493][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.494][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.495][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.496][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.497][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:27.498][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:27.499][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.500][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-25 06:36:27.501][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:27.502][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.503][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.505][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.506][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:27.507][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:27.507][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:27.508][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:27.509][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:27.510][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:27.511][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.512][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.513][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:27.514][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:27.515][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.516][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.517][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-25 06:36:27.519][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.520][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:27.521][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.522][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:27.523][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.524][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.526][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.527][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.528][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:27.529][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:27.530][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.531][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-25 06:36:27.532][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:27.533][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.534][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:27.535][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.536][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:27.537][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:27.538][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:27.539][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:27.539][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:27.540][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:27.541][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:27.542][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.543][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:27.544][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:27.545][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:27.546][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:27.548][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:27.549][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:27.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:27.629][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-25 06:36:27.631][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-25 06:36:27.632][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-25 06:36:27.634][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-25 06:36:27.635][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-25 06:36:27.637][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-25 06:36:27.638][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:27.640][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:27.641][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-25 06:36:27.643][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-25 06:36:27.644][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-25 06:36:27.645][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-25 06:36:27.647][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:27.648][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:27.650][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-25 06:36:27.651][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-25 06:36:27.652][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-25 06:36:27.654][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-25 06:36:27.655][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-25 06:36:27.657][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-25 06:36:27.658][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-25 06:36:27.659][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-25 06:36:27.660][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-25 06:36:27.662][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-25 06:36:27.663][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-25 06:36:27.664][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-25 06:36:27.666][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-25 06:36:27.667][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-25 06:36:27.668][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-25 06:36:27.670][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-25 06:36:27.671][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-25 06:36:27.673][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-25 06:36:27.674][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-25 06:36:27.675][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-25 06:36:27.677][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-25 06:36:27.683][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-25 06:36:27.684][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-25 06:36:27.686][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-25 06:36:27.687][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-25 06:36:27.689][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-25 06:36:27.690][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-25 06:36:27.692][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-25 06:36:27.693][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-25 06:36:27.695][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-25 06:36:27.696][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-25 06:36:27.698][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-25 06:36:27.699][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-25 06:36:27.701][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-25 06:36:27.702][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-25 06:36:27.703][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-25 06:36:27.705][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-25 06:36:27.706][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-25 06:36:27.708][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-25 06:36:27.709][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-25 06:36:27.711][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-25 06:36:27.712][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-25 06:36:27.713][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-25 06:36:27.715][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-25 06:36:27.716][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-25 06:36:27.718][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-25 06:36:27.719][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-25 06:36:27.721][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-25 06:36:27.722][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-25 06:36:27.724][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-25 06:36:27.725][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-25 06:36:27.727][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-25 06:36:27.728][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-25 06:36:27.730][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-25 06:36:27.731][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-25 06:36:27.733][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-25 06:36:27.734][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-25 06:36:27.735][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-25 06:36:27.737][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-25 06:36:27.738][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-25 06:36:27.740][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-25 06:36:27.741][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-25 06:36:27.742][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-25 06:36:27.744][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-25 06:36:27.745][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-25 06:36:27.747][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-25 06:36:27.748][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-25 06:36:27.749][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-25 06:36:27.751][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-25 06:36:27.757][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-25 06:36:27.759][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-25 06:36:27.760][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:27.761][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:27.762][biodb::testContext] Test context - Test abstract declaration.
biodb.INFO [2022-01-25 06:36:27.763][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:27.764][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:27.765][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:27.766][biodb::testThat] Running test function  test.abstractClass.declaration  (" An abstract class cannot be instantiated. ").
biodb.INFO [2022-01-25 06:36:27.767][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:27.768][biodb::testThat] 
biodb.ERROR[2022-01-25 06:36:27.772][abstractClass] Class BiodbConnBase is abstract and thus cannot be instantiated.
biodb.INFO [2022-01-25 06:36:27.783][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-25 06:36:27.784][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-25 06:36:27.785][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:27.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:27.787][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:27.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-25 06:36:27.792][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:27.793][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:27.794][biodb::testContext] Test context - Testing BiodbUrl.
biodb.INFO [2022-01-25 06:36:27.795][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:27.796][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:27.798][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:27.799][biodb::testThat] Running test function  test_BiodbUrl  (" BiodbUrl works fine. ").
biodb.INFO [2022-01-25 06:36:27.800][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:27.800][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:27.817][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:27.818][biodb::testThat] Running test function  test_biodburl_encoding  (" BiodbUrl encoding works correctly. ").
biodb.INFO [2022-01-25 06:36:27.819][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:27.820][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:27.850][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:27.851][biodb::testThat] Running test function  test_getRCurlContent  (" getRCurlContent() works fine. ").
biodb.INFO [2022-01-25 06:36:27.852][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:27.853][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:28.471][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:28.473][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:28.475][biodb::testContext] Test context - Testing Range class.
biodb.INFO [2022-01-25 06:36:28.477][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:28.478][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:28.480][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:28.482][biodb::testThat] Running test function  test_range  (" Range class works correctly. ").
biodb.INFO [2022-01-25 06:36:28.483][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:28.485][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:28.586][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:28.589][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-25 06:36:28.605][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:28.609][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-25 06:36:28.611][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-25 06:36:28.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.616][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-25 06:36:28.617][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-25 06:36:28.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.622][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-25 06:36:28.624][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-25 06:36:28.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.628][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-25 06:36:28.629][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-25 06:36:28.630][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-25 06:36:28.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.635][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-25 06:36:28.636][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-25 06:36:28.696][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-25 06:36:28.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.702][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-25 06:36:28.703][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-25 06:36:28.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.707][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-25 06:36:28.709][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-25 06:36:28.710][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-25 06:36:28.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.715][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-25 06:36:28.716][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-25 06:36:28.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.720][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-25 06:36:28.722][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-25 06:36:28.723][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-25 06:36:28.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.727][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:28.729][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-25 06:36:28.730][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-25 06:36:28.731][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-25 06:36:28.732][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-25 06:36:28.733][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-25 06:36:28.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.738][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-25 06:36:28.739][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-25 06:36:28.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.744][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-25 06:36:28.745][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-25 06:36:28.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.749][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-25 06:36:28.751][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-25 06:36:28.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.755][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-25 06:36:28.757][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-25 06:36:28.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.761][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-25 06:36:28.763][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-25 06:36:28.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.767][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:28.768][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-25 06:36:28.774][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-01-25 06:36:28.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.778][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-25 06:36:28.779][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-25 06:36:28.781][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-25 06:36:28.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.786][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:28.788][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.790][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-25 06:36:28.791][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.792][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:28.793][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.795][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.796][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.797][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.798][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:28.799][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:28.801][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.802][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-25 06:36:28.803][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:28.804][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.805][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.806][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:28.806][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:28.806][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:28.806][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:28.806][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:28.808][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:28.809][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:28.810][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:28.811][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:28.812][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:28.813][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:28.815][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.816][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.817][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:28.818][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:28.819][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.820][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.822][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-25 06:36:28.824][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.825][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:28.826][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.828][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:28.829][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.830][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.831][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.832][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.833][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:28.834][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:28.836][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.837][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-25 06:36:28.838][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:28.839][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.840][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.842][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:28.842][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:28.842][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:28.842][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:28.842][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:28.843][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:28.844][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:28.845][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:28.846][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:28.847][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:28.848][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:28.849][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.851][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.852][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:28.853][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:28.854][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.855][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.856][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:28.859][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.860][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-25 06:36:28.861][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.862][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:28.863][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.865][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.866][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.867][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:28.869][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:28.870][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.871][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-25 06:36:28.872][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:28.873][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.874][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.875][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.876][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:28.877][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:28.877][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:28.878][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:28.879][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:28.880][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:28.881][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.882][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.883][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:28.884][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:28.885][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.886][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.887][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-25 06:36:28.889][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.890][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:28.891][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.892][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:28.898][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.899][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.900][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.901][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.902][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:28.903][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:28.904][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.905][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-25 06:36:28.906][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:28.907][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.907][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:28.908][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.909][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:28.910][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:28.911][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:28.912][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:28.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:28.913][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:28.914][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:28.915][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.916][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:28.917][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:28.918][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:28.918][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:28.920][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:28.921][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:28.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:28.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:28.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:28.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:28.990][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-25 06:36:28.992][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-25 06:36:28.993][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-25 06:36:28.994][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-25 06:36:28.995][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-25 06:36:28.997][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-25 06:36:28.998][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:28.999][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:29.000][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-25 06:36:29.002][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-25 06:36:29.003][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-25 06:36:29.004][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-25 06:36:29.005][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:29.007][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:29.008][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-25 06:36:29.009][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-25 06:36:29.010][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-25 06:36:29.012][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-25 06:36:29.013][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-25 06:36:29.014][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-25 06:36:29.015][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-25 06:36:29.017][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-25 06:36:29.018][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-25 06:36:29.019][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-25 06:36:29.020][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-25 06:36:29.022][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-25 06:36:29.023][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-25 06:36:29.024][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-25 06:36:29.025][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-25 06:36:29.027][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-25 06:36:29.028][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-25 06:36:29.029][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-25 06:36:29.030][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-25 06:36:29.032][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-25 06:36:29.033][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-25 06:36:29.034][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-25 06:36:29.035][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-25 06:36:29.037][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-25 06:36:29.038][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-25 06:36:29.039][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-25 06:36:29.041][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-25 06:36:29.042][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-25 06:36:29.048][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-25 06:36:29.050][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-25 06:36:29.051][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-25 06:36:29.053][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-25 06:36:29.054][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-25 06:36:29.055][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-25 06:36:29.057][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-25 06:36:29.058][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-25 06:36:29.059][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-25 06:36:29.061][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-25 06:36:29.062][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-25 06:36:29.063][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-25 06:36:29.065][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-25 06:36:29.066][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-25 06:36:29.067][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-25 06:36:29.068][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-25 06:36:29.070][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-25 06:36:29.071][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-25 06:36:29.072][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-25 06:36:29.073][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-25 06:36:29.075][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-25 06:36:29.076][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-25 06:36:29.077][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-25 06:36:29.078][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-25 06:36:29.080][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-25 06:36:29.081][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-25 06:36:29.082][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-25 06:36:29.083][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-25 06:36:29.085][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-25 06:36:29.086][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-25 06:36:29.087][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-25 06:36:29.088][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-25 06:36:29.090][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-25 06:36:29.091][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-25 06:36:29.092][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-25 06:36:29.093][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-25 06:36:29.095][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-25 06:36:29.096][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-25 06:36:29.097][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-25 06:36:29.099][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-25 06:36:29.100][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-25 06:36:29.101][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-25 06:36:29.103][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-25 06:36:29.104][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:29.105][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:29.106][biodb::testContext] Test context - Test object printing.
biodb.INFO [2022-01-25 06:36:29.106][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:29.107][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:29.108][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.109][biodb::testThat] Running test function  test.BiodbMain.print  (" BiodbMain print method returns correct information. ").
biodb.INFO [2022-01-25 06:36:29.110][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:29.111][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.117][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.118][biodb::testThat] Running test function  test.BiodbCache.print  (" BiodbCache print method returns correct information. ").
biodb.INFO [2022-01-25 06:36:29.119][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:29.120][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.126][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.127][biodb::testThat] Running test function  test.BiodbConfig.print  (" BiodbConfig print method returns correct information. ").
biodb.INFO [2022-01-25 06:36:29.128][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:29.128][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.134][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.135][biodb::testThat] Running test function  test.BiodbFactory.print  (" BiodbFactory print method returns correct information. ").
biodb.INFO [2022-01-25 06:36:29.136][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:29.137][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.141][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.142][biodb::testThat] Running test function  test.BiodbEntry.print  (" BiodbEntry print method returns correct information. ").
biodb.INFO [2022-01-25 06:36:29.143][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:29.144][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:29.148][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:29.149][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-01-25 06:36:29.161][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2022-01-25 06:36:29.163][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2022-01-25 06:36:29.164][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-01-25 06:36:29.165][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:29.166][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:29.167][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2022-01-25 06:36:29.168][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-25 06:36:29.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.185][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.278][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2022-01-25 06:36:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-25 06:36:29.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-25 06:36:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.287][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.287][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.289][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.293][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.293][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.293][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.295][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2022-01-25 06:36:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.299][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.299][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.299][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.299][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.301][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2022-01-25 06:36:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.306][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.306][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.306][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.306][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.306][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.307][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-25 06:36:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.312][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.312][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.312][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.312][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.312][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.312][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.313][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.318][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.318][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.318][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.318][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.318][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.318][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.318][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.319][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-01-25 06:36:29.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:29.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.324][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.324][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.324][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.324][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.324][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.324][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.324][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.324][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:29.358][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2022-01-25 06:36:29.370][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2022-01-25 06:36:29.371][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2022-01-25 06:36:29.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:29.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:29.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:29.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:29.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:29.387][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.387][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.387][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.387][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.387][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.387][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.387][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.387][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:29.388][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.388][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.388][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.388][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.388][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.388][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.388][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.388][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:29.389][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.389][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.389][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.389][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.389][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.389][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.389][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.389][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:29.390][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.390][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.390][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.390][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.390][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.390][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:29.391][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.391][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.391][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.391][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.391][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.391][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:29.392][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.392][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.392][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.392][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.392][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.392][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.392][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.392][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:29.393][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.393][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.393][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.393][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.393][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:29.394][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:29.394][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:29.394][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:29.394][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:29.394][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:29.394][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:29.394][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:29.394][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2022-01-25 06:36:29.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-25 06:36:29.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-25 06:36:29.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-25 06:36:29.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-25 06:36:29.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.475][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:29.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:29.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:29.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.534][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:29.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.598][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.606][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:29.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:29.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:29.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:29.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.658][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:29.659][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-25 06:36:29.660][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:29.661][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-25 06:36:29.662][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.664][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.665][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-25 06:36:29.666][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-25 06:36:29.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.668][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.669][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.670][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.672][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.673][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.674][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.675][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.676][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.677][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.679][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.680][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:29.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:29.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.687][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.688][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:29.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.691][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.692][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:29.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:29.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.695][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.695][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.696][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.698][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.699][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-25 06:36:29.700][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.701][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.703][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.704][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.705][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.706][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.707][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.708][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.710][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.711][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.712][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.713][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.714][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-25 06:36:29.715][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-25 06:36:29.716][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.717][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.719][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.720][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.721][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.722][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.723][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.724][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.726][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.727][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.728][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.730][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.730][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2022-01-25 06:36:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.768][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:29.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:29.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.795][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:29.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:29.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.806][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:29.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:29.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:29.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:29.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:29.868][self$createEntryFromContent] Accession numbers: C1.
biodb.INFO [2022-01-25 06:36:29.879][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-01-25 06:36:29.881][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.882][biodb::testThat] Running test function  test.BiodbConn.print  (" BiodbConn print method returns correct information. ").
biodb.INFO [2022-01-25 06:36:29.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:29.883][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:29.912][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:29.924][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-01-25 06:36:29.984][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.985][biodb::testThat] Running test function  test.BiodbDbsInfo.print  (" BiodbDbsInfo print method returns correct information. ").
biodb.INFO [2022-01-25 06:36:29.986][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:29.986][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.991][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.992][biodb::testThat] Running test function  test.BiodbEntryFields.print  (" BiodbEntryFields print method returns correct information. ").
biodb.INFO [2022-01-25 06:36:29.993][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:29.994][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:29.997][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-01-25 06:36:29.998][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-01-25 06:36:29.999][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-25 06:36:30.000][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.002][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-25 06:36:30.007][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:30.008][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:30.009][biodb::testContext] Test context - Testing mass functions
biodb.INFO [2022-01-25 06:36:30.010][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:30.010][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:30.012][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.012][biodb::testThat] Running test function  test_convertTolToRange  (" Conversion from tolerance to range works correctly. ").
biodb.INFO [2022-01-25 06:36:30.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:30.014][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.028][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.029][biodb::testThat] Running test function  test_closeMatchPpm  (" closeMatchPpm() works correctly. ").
biodb.INFO [2022-01-25 06:36:30.030][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:30.031][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.044][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:30.045][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:30.046][biodb::testContext] Test context - Testing biodb functions
biodb.INFO [2022-01-25 06:36:30.047][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:30.048][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:30.049][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.050][biodb::testThat] Running test function  test_connNameToClassPrefix  (" We can convert a connector name into a class prefix. ").
biodb.INFO [2022-01-25 06:36:30.051][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:30.051][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.056][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.057][biodb::testThat] Running test function  test_extractVersion  (" We can extract the version number from a template file. ").
biodb.INFO [2022-01-25 06:36:30.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:30.059][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.067][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:30.068][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:30.069][biodb::testContext] Test context - Testing miscellaneous functions
biodb.INFO [2022-01-25 06:36:30.070][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:30.071][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:30.072][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.073][biodb::testThat] Running test function  test_splitVersion  (" We can split version string. ").
biodb.INFO [2022-01-25 06:36:30.073][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:30.074][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.083][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.084][biodb::testThat] Running test function  test_compareVersions  (" We can compare string versions. ").
biodb.INFO [2022-01-25 06:36:30.085][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:30.086][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.106][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:30.107][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-25 06:36:30.111][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:30.112][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-25 06:36:30.113][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-25 06:36:30.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.117][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-25 06:36:30.118][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-25 06:36:30.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.121][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-25 06:36:30.122][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-25 06:36:30.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.126][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-25 06:36:30.127][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-25 06:36:30.127][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-25 06:36:30.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.131][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-25 06:36:30.132][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-25 06:36:30.133][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-25 06:36:30.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.141][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-25 06:36:30.142][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-25 06:36:30.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.146][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-25 06:36:30.146][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-25 06:36:30.147][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-25 06:36:30.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.151][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-25 06:36:30.152][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-25 06:36:30.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.155][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-25 06:36:30.156][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-25 06:36:30.157][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-25 06:36:30.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.160][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:30.161][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-25 06:36:30.162][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-25 06:36:30.163][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-25 06:36:30.164][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-25 06:36:30.165][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-25 06:36:30.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.168][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-25 06:36:30.169][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-25 06:36:30.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.172][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-25 06:36:30.173][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-25 06:36:30.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.176][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-25 06:36:30.177][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-25 06:36:30.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.181][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-25 06:36:30.181][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-25 06:36:30.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.185][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-25 06:36:30.186][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-25 06:36:30.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.189][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:30.190][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-25 06:36:30.194][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-01-25 06:36:30.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.197][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-25 06:36:30.198][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-25 06:36:30.199][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-25 06:36:30.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.202][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:30.204][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.205][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-25 06:36:30.206][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.207][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:30.208][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.208][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.209][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.210][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.211][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:30.212][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:30.213][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.214][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-25 06:36:30.215][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:30.216][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.217][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.217][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:30.217][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:30.217][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.217][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:30.217][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:30.218][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:30.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:30.220][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:30.221][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:30.222][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:30.223][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:30.224][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.224][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.225][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:30.226][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:30.227][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.228][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.229][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-25 06:36:30.231][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.231][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:30.232][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.233][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:30.234][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.235][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.236][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.237][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.238][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:30.239][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:30.240][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.240][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-25 06:36:30.241][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:30.242][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.243][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.244][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:30.244][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:30.244][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.244][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:30.244][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:30.245][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:30.246][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:30.247][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:30.248][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:30.248][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:30.249][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:30.250][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.251][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.252][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:30.253][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:30.254][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.254][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.256][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:30.257][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.258][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-25 06:36:30.259][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.260][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:30.261][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.262][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.263][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.264][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.264][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:30.265][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:30.266][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.267][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-25 06:36:30.268][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:30.269][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.270][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.271][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.272][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:30.273][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:30.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:30.274][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:30.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:30.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:30.277][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.278][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.279][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:30.279][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:30.280][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.281][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.282][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-25 06:36:30.288][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.289][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:30.290][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.291][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:30.292][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.293][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.294][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.295][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.296][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:30.297][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:30.298][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.299][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-25 06:36:30.300][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:30.300][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.301][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:30.302][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.303][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:30.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:30.305][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:30.306][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:30.307][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:30.307][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:30.308][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:30.309][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.310][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:30.311][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:30.312][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:30.313][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:30.314][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:30.315][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:30.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.384][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-25 06:36:30.385][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-25 06:36:30.387][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-25 06:36:30.388][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-25 06:36:30.389][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-25 06:36:30.391][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-25 06:36:30.392][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:30.393][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:30.394][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-25 06:36:30.396][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-25 06:36:30.397][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-25 06:36:30.398][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-25 06:36:30.399][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:30.401][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:30.402][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-25 06:36:30.403][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-25 06:36:30.404][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-25 06:36:30.406][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-25 06:36:30.407][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-25 06:36:30.408][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-25 06:36:30.409][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-25 06:36:30.411][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-25 06:36:30.412][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-25 06:36:30.413][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-25 06:36:30.414][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-25 06:36:30.416][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-25 06:36:30.417][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-25 06:36:30.418][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-25 06:36:30.419][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-25 06:36:30.421][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-25 06:36:30.422][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-25 06:36:30.428][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-25 06:36:30.429][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-25 06:36:30.431][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-25 06:36:30.432][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-25 06:36:30.433][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-25 06:36:30.434][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-25 06:36:30.436][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-25 06:36:30.437][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-25 06:36:30.438][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-25 06:36:30.440][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-25 06:36:30.441][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-25 06:36:30.442][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-25 06:36:30.443][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-25 06:36:30.445][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-25 06:36:30.446][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-25 06:36:30.447][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-25 06:36:30.448][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-25 06:36:30.450][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-25 06:36:30.451][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-25 06:36:30.452][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-25 06:36:30.453][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-25 06:36:30.454][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-25 06:36:30.456][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-25 06:36:30.457][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-25 06:36:30.458][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-25 06:36:30.460][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-25 06:36:30.461][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-25 06:36:30.462][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-25 06:36:30.463][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-25 06:36:30.464][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-25 06:36:30.466][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-25 06:36:30.467][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-25 06:36:30.468][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-25 06:36:30.469][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-25 06:36:30.471][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-25 06:36:30.472][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-25 06:36:30.473][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-25 06:36:30.474][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-25 06:36:30.476][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-25 06:36:30.477][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-25 06:36:30.478][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-25 06:36:30.479][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-25 06:36:30.481][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-25 06:36:30.482][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-25 06:36:30.483][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-25 06:36:30.484][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-25 06:36:30.486][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-25 06:36:30.487][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-25 06:36:30.488][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-25 06:36:30.489][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-25 06:36:30.491][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-25 06:36:30.492][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-25 06:36:30.493][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-25 06:36:30.495][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-25 06:36:30.496][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:30.496][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:30.497][biodb::testContext] Test context - Test messages.
biodb.INFO [2022-01-25 06:36:30.498][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:30.499][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:30.500][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:30.501][biodb::testThat] Running test function  test.deprecatedMethods  (" Deprecated methods send correct message. ").
biodb.INFO [2022-01-25 06:36:30.502][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:30.503][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:30.507][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:30.508][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-01-25 06:36:30.509][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2022-01-25 06:36:30.510][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2022-01-25 06:36:30.512][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-01-25 06:36:30.513][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:30.514][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:30.515][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2022-01-25 06:36:30.516][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-25 06:36:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.521][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.522][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2022-01-25 06:36:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-25 06:36:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-25 06:36:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.530][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.530][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.532][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.536][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.536][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.536][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.537][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2022-01-25 06:36:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.542][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.542][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.542][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.542][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.543][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2022-01-25 06:36:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.548][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.548][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.548][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.548][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.548][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.549][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-25 06:36:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.554][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.554][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.554][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.554][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.554][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.554][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.555][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.560][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.560][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.560][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.560][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.561][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-01-25 06:36:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.565][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.565][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.565][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.565][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.565][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.565][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.565][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.565][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:30.575][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2022-01-25 06:36:30.585][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2022-01-25 06:36:30.586][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2022-01-25 06:36:30.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:30.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:30.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:30.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:30.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:30.594][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.594][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.594][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.594][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.594][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.594][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.594][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.594][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:30.595][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.595][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.595][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.595][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.595][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.595][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.595][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.595][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:30.596][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.596][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.596][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.596][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.596][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.596][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.596][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.596][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:30.597][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.597][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.597][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.597][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.597][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.597][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.597][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.597][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:30.598][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.598][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.598][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.598][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.598][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.598][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.598][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.598][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:30.599][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.599][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.599][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.599][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.599][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.599][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.599][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.599][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:30.600][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.600][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.600][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.600][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.600][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.600][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.600][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.600][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:30.601][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:30.601][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-01-25 06:36:30.601][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-01-25 06:36:30.601][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-01-25 06:36:30.601][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-01-25 06:36:30.601][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:30.601][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:30.601][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2022-01-25 06:36:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-25 06:36:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-25 06:36:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-25 06:36:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-25 06:36:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:30.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.727][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:30.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.756][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:30.757][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-25 06:36:30.758][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:30.759][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-25 06:36:30.760][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.763][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.763][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2022-01-25 06:36:30.764][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-01-25 06:36:30.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.766][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.767][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.768][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.770][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.771][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.772][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.773][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.774][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.775][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.777][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.778][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:30.778][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:30.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.780][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.781][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:30.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.784][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.784][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:30.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:30.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.787][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.788][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.789][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.791][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.791][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-25 06:36:30.792][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.793][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.795][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.796][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.797][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.799][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.799][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.800][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.802][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.803][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.804][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.806][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.806][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-25 06:36:30.807][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-01-25 06:36:30.808][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.809][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.811][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.812][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.813][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.814][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.815][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.816][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.818][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.819][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.820][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.821][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.822][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2022-01-25 06:36:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:30.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-01-25 06:36:30.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:30.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.890][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.894][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-01-25 06:36:30.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.923][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:30.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:30.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:30.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:30.950][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2022-01-25 06:36:30.968][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-25 06:36:30.969][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:30.970][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:30.987][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-25 06:36:30.987][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-25 06:36:30.988][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:30.989][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.012][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-25 06:36:31.012][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-01-25 06:36:31.013][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.014][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.WARN [2022-01-25 06:36:31.030][self$searchForEntries] This database is not searchable by field "name".
biodb.TRACE[2022-01-25 06:36:31.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:31.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:31.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:31.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:31.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-25 06:36:31.049][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-01-25 06:36:31.050][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:31.051][biodb::testThat] Running test function  test.default.messages  (" Test what messages are printed by default. ").
biodb.INFO [2022-01-25 06:36:31.052][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:31.053][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:31.081][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-25 06:36:31.082][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-25 06:36:31.083][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.084][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-25 06:36:31.093][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:31.094][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-25 06:36:31.098][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:31.099][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-25 06:36:31.100][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.103][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-25 06:36:31.104][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.107][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-25 06:36:31.108][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.111][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-25 06:36:31.112][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-25 06:36:31.113][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-25 06:36:31.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.116][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-25 06:36:31.117][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-25 06:36:31.118][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.121][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-25 06:36:31.122][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-25 06:36:31.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.125][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-25 06:36:31.126][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-25 06:36:31.127][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-25 06:36:31.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.130][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-25 06:36:31.130][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.139][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-25 06:36:31.140][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-25 06:36:31.141][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.144][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:31.145][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-25 06:36:31.146][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-25 06:36:31.147][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-25 06:36:31.148][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-25 06:36:31.149][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-25 06:36:31.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.152][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-25 06:36:31.153][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-25 06:36:31.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.156][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-25 06:36:31.157][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-25 06:36:31.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.160][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-25 06:36:31.161][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-25 06:36:31.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.164][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-25 06:36:31.165][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-25 06:36:31.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.168][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-25 06:36:31.169][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-25 06:36:31.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.172][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:31.173][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-25 06:36:31.178][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-01-25 06:36:31.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.181][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-25 06:36:31.182][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-25 06:36:31.183][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-25 06:36:31.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.186][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:31.187][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.188][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-25 06:36:31.189][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.190][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:31.191][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.192][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.193][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.193][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.194][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:31.195][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:31.196][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.197][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-25 06:36:31.198][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:31.199][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.199][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.200][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:31.200][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:31.200][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:31.200][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:31.200][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:31.201][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:31.202][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.203][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.204][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:31.205][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.205][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.206][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.207][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.208][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.208][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.209][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.210][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.212][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-25 06:36:31.214][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.215][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:31.217][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.218][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:31.219][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.221][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.222][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.223][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.225][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:31.226][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:31.227][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.229][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-25 06:36:31.230][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:31.231][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.233][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.234][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:31.234][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:31.234][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:31.234][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:31.234][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:31.235][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:31.237][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.238][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.239][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:31.240][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.241][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.243][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.244][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.245][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.246][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.248][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.249][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.251][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:31.253][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.254][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-25 06:36:31.256][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:31.258][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.260][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.261][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.262][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.264][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:31.265][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:31.266][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.267][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-25 06:36:31.269][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:31.270][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.271][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.272][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.274][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:31.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.277][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:31.279][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.280][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.281][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.282][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.284][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.285][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.286][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.287][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.289][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-25 06:36:31.291][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.293][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:31.294][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.295][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:31.297][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.298][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.299][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.301][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.302][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:31.310][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:31.312][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.313][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-25 06:36:31.315][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:31.316][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.317][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.319][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.320][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:31.321][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.323][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.324][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:31.325][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.328][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.329][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.331][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.332][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.333][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.334][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.335][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:31.336][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.404][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-25 06:36:31.406][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-25 06:36:31.407][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-25 06:36:31.408][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-25 06:36:31.410][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-25 06:36:31.411][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-25 06:36:31.412][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:31.413][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:31.415][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-25 06:36:31.416][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-25 06:36:31.417][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-25 06:36:31.418][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-25 06:36:31.420][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:31.421][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:31.422][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-25 06:36:31.423][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-25 06:36:31.425][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-25 06:36:31.426][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-25 06:36:31.427][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-25 06:36:31.429][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-25 06:36:31.430][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-25 06:36:31.431][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-25 06:36:31.432][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-25 06:36:31.434][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-25 06:36:31.435][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-25 06:36:31.436][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-25 06:36:31.437][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-25 06:36:31.439][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-25 06:36:31.440][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-25 06:36:31.441][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-25 06:36:31.442][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-25 06:36:31.444][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-25 06:36:31.445][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-25 06:36:31.446][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-25 06:36:31.447][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-25 06:36:31.453][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-25 06:36:31.455][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-25 06:36:31.456][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-25 06:36:31.457][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-25 06:36:31.459][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-25 06:36:31.460][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-25 06:36:31.461][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-25 06:36:31.463][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-25 06:36:31.464][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-25 06:36:31.465][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-25 06:36:31.467][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-25 06:36:31.468][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-25 06:36:31.469][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-25 06:36:31.470][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-25 06:36:31.472][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-25 06:36:31.473][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-25 06:36:31.474][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-25 06:36:31.476][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-25 06:36:31.477][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-25 06:36:31.478][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-25 06:36:31.480][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-25 06:36:31.481][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-25 06:36:31.482][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-25 06:36:31.484][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-25 06:36:31.485][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-25 06:36:31.486][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-25 06:36:31.487][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-25 06:36:31.488][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-25 06:36:31.490][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-25 06:36:31.491][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-25 06:36:31.492][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-25 06:36:31.493][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-25 06:36:31.495][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-25 06:36:31.496][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-25 06:36:31.497][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-25 06:36:31.498][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-25 06:36:31.500][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-25 06:36:31.501][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-25 06:36:31.502][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-25 06:36:31.503][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-25 06:36:31.505][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-25 06:36:31.506][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-25 06:36:31.507][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-25 06:36:31.508][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-25 06:36:31.510][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-25 06:36:31.511][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-25 06:36:31.512][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-25 06:36:31.513][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-25 06:36:31.515][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-25 06:36:31.516][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-25 06:36:31.517][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:31.518][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:31.519][biodb::testContext] Test context - Test config.
biodb.INFO [2022-01-25 06:36:31.519][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:31.520][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:31.521][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:31.522][biodb::testThat] Running test function  test.listKeys  (" Keys are listed correctly. ").
biodb.INFO [2022-01-25 06:36:31.523][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:31.524][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:31.537][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-25 06:36:31.538][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-25 06:36:31.539][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.540][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-25 06:36:31.546][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:31.547][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:31.547][biodb::testContext] Test context - Test persistent cache.
biodb.INFO [2022-01-25 06:36:31.548][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:31.549][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:31.555][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:31.556][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-25 06:36:31.560][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:31.561][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-25 06:36:31.562][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.565][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-25 06:36:31.566][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.569][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-25 06:36:31.570][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.573][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-25 06:36:31.574][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-25 06:36:31.575][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-25 06:36:31.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.578][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-25 06:36:31.579][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-25 06:36:31.580][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.584][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-25 06:36:31.584][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-25 06:36:31.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.588][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-25 06:36:31.589][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-25 06:36:31.595][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-25 06:36:31.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.598][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-25 06:36:31.599][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.602][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-25 06:36:31.603][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-25 06:36:31.604][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.608][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:31.608][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-25 06:36:31.609][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-25 06:36:31.610][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-25 06:36:31.611][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-25 06:36:31.612][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-25 06:36:31.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.615][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-25 06:36:31.616][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-25 06:36:31.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.619][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-25 06:36:31.620][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-25 06:36:31.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.623][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-25 06:36:31.624][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-25 06:36:31.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.627][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-25 06:36:31.628][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-25 06:36:31.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.632][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-25 06:36:31.633][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-25 06:36:31.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.636][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:31.637][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-25 06:36:31.642][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-01-25 06:36:31.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.645][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-25 06:36:31.646][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-25 06:36:31.647][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-25 06:36:31.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.650][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:31.652][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.653][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-25 06:36:31.654][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.655][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:31.655][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.656][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.657][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.658][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.659][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:31.660][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:31.661][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.661][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-25 06:36:31.662][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:31.663][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.664][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.665][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:31.665][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:31.665][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:31.665][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:31.665][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:31.666][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:31.666][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.667][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.668][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:31.669][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.670][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.671][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.672][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.672][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.673][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.674][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.675][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.676][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-25 06:36:31.678][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.678][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:31.679][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.680][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:31.681][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.682][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.683][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.684][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.685][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:31.686][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:31.686][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.687][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-25 06:36:31.688][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:31.689][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.690][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.691][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:31.691][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:31.691][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:31.691][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:31.691][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:31.692][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:31.693][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.693][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.694][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:31.695][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.697][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.698][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.698][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.699][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.700][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.701][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.702][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:31.704][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.705][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-25 06:36:31.705][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.706][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:31.707][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.708][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.709][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.710][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.711][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:31.712][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:31.713][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.714][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-25 06:36:31.714][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:31.715][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.716][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.717][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.718][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:31.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.720][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:31.721][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.722][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.723][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.724][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.725][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.726][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.726][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.727][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.728][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-25 06:36:31.735][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.736][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:31.736][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.737][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:31.738][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.739][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.740][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.742][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:31.743][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:31.743][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.744][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-25 06:36:31.745][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:31.746][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.747][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:31.748][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.749][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:31.749][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.750][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.751][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:31.752][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:31.753][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:31.754][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:31.754][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.755][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:31.756][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:31.757][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:31.758][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:31.759][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:31.760][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.826][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-25 06:36:31.828][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-25 06:36:31.829][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-25 06:36:31.830][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-25 06:36:31.831][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-25 06:36:31.833][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-25 06:36:31.834][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:31.835][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:31.837][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-25 06:36:31.838][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-25 06:36:31.839][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-25 06:36:31.840][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-25 06:36:31.842][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:31.843][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:31.844][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-25 06:36:31.845][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-25 06:36:31.847][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-25 06:36:31.848][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-25 06:36:31.849][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-25 06:36:31.850][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-25 06:36:31.852][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-25 06:36:31.853][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-25 06:36:31.854][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-25 06:36:31.855][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-25 06:36:31.857][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-25 06:36:31.858][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-25 06:36:31.864][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-25 06:36:31.865][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-25 06:36:31.866][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-25 06:36:31.868][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-25 06:36:31.869][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-25 06:36:31.870][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-25 06:36:31.872][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-25 06:36:31.873][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-25 06:36:31.874][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-25 06:36:31.875][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-25 06:36:31.876][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-25 06:36:31.878][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-25 06:36:31.879][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-25 06:36:31.880][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-25 06:36:31.881][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-25 06:36:31.883][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-25 06:36:31.884][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-25 06:36:31.885][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-25 06:36:31.887][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-25 06:36:31.888][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-25 06:36:31.889][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-25 06:36:31.890][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-25 06:36:31.892][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-25 06:36:31.893][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-25 06:36:31.894][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-25 06:36:31.895][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-25 06:36:31.897][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-25 06:36:31.898][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-25 06:36:31.899][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-25 06:36:31.900][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-25 06:36:31.901][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-25 06:36:31.903][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-25 06:36:31.904][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-25 06:36:31.905][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-25 06:36:31.907][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-25 06:36:31.908][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-25 06:36:31.909][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-25 06:36:31.910][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-25 06:36:31.911][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-25 06:36:31.913][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-25 06:36:31.914][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-25 06:36:31.915][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-25 06:36:31.916][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-25 06:36:31.917][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-25 06:36:31.919][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-25 06:36:31.920][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-25 06:36:31.921][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-25 06:36:31.922][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-25 06:36:31.924][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-25 06:36:31.925][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-25 06:36:31.926][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-25 06:36:31.927][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-25 06:36:31.928][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-25 06:36:31.930][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-25 06:36:31.931][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-25 06:36:31.932][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-25 06:36:31.933][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-25 06:36:31.935][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-25 06:36:31.936][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:31.937][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2022-01-25 06:36:31.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:31.942][biodb$getConfig()$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-25 06:36:31.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:31.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:31.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:31.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:31.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-25 06:36:31.948][biodb$getPersistentCache()$erase] Erasing cache "/home/biocbuild/.cache/R/biodb".
biodb.DEBUG[2022-01-25 06:36:31.969][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:31.970][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-01-25 06:36:31.971][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:31.972][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2022-01-25 06:36:31.973][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:31.974][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:31.976][private$initDb] Loading file database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:31.977][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-25 06:36:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:31.982][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:31.983][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-25 06:36:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:31.988][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:31.988][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:31.989][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:31.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:31.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:31.994][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:31.994][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:31.994][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:31.995][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-01-25 06:36:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:31.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:31.999][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:31.999][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:31.999][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:31.999][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.000][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:32.023][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.023][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.023][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.023][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.023][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.027][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-01-25 06:36:32.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:32.032][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.032][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.032][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.032][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.032][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.032][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.034][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2022-01-25 06:36:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:32.058][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.058][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.058][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.058][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.058][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.058][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.058][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.059][self$setField] Set field description to column(s) description.
biodb.TRACE[2022-01-25 06:36:32.060][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:32.064][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.064][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.064][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.064][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.064][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.064][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.064][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.064][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.INFO [2022-01-25 06:36:32.075][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-01-25 06:36:32.076][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^.*\.tsv$.
biodb.DEBUG[2022-01-25 06:36:32.079][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-25 06:36:32.080][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-25 06:36:32.081][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-25 06:36:32.083][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-25 06:36:32.084][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-25 06:36:32.085][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-25 06:36:32.086][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:32.087][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:32.088][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:32.089][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-25 06:36:32.095][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-01-25 06:36:32.119][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1456.tsv"
biodb.DEBUG[2022-01-25 06:36:32.125][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-25 06:36:32.134][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:32.135][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-25 06:36:32.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:32.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:32.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:32.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:32.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:32.145][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.145][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.145][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.145][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.145][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.145][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.145][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.145][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:32.146][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.146][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.146][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.146][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.146][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.146][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.146][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.146][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:32.147][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.147][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.147][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.147][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.147][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.147][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.147][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.147][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:32.148][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.148][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.148][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.148][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.148][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.148][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.148][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.148][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:32.149][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.149][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.149][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.149][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.149][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.149][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.149][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.149][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:32.150][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.150][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.150][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.150][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.150][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.150][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.150][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.150][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:32.151][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.151][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.151][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.151][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.151][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.151][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.151][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.151][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:32.152][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:32.152][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:32.152][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:32.152][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:32.152][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:32.152][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:32.152][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:32.152][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2022-01-25 06:36:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:32.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:32.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:32.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:32.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:32.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:32.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:32.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:32.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:32.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:32.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:32.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.471][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.475][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.511][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.514][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:32.583][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2022-01-25 06:36:32.602][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^.*\.tsv$.
biodb.DEBUG[2022-01-25 06:36:32.611][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^.*\.tsv$.
biodb.DEBUG[2022-01-25 06:36:32.612][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^(.*)\.tsv$
biodb.DEBUG[2022-01-25 06:36:32.613][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2022-01-25 06:36:32.617][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:32.617][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2022-01-25 06:36:32.618][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:32.619][biodb::testThat] 
biodb.WARN [2022-01-25 06:36:32.621][self$getFolderPath] No cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2022-01-25 06:36:32.624][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:32.625][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2022-01-25 06:36:32.626][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:32.626][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:32.636][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:32.638][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:32.644][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:32.645][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2022-01-25 06:36:32.646][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:32.647][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:32.648][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" for "foo-1234567890abcdef01234".
biodb.INFO [2022-01-25 06:36:32.653][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:32.654][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2022-01-25 06:36:32.655][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:32.656][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:32.684][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-25 06:36:32.726][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-25 06:36:32.742][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-25 06:36:32.743][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-25 06:36:32.744][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-25 06:36:32.745][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-25 06:36:32.746][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:32.747][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:32.748][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:32.749][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-25 06:36:32.760][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-01-25 06:36:32.780][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1456.tsv"
biodb.DEBUG[2022-01-25 06:36:32.784][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-25 06:36:32.814][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:32.815][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-25 06:36:32.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:32.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:32.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:32.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:32.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:32.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.909][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:32.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:32.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:32.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:32.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:32.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:32.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:32.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:32.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:32.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:32.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:32.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:32.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.000][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.040][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:33.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:33.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:33.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:33.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:33.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:33.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:33.245][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-25 06:36:33.257][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:33.262][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:33.263][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2022-01-25 06:36:33.264][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:33.265][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:33.267][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-25 06:36:33.268][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-25 06:36:33.270][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.INFO [2022-01-25 06:36:33.271][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.TRACE[2022-01-25 06:36:33.272][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-25 06:36:33.273][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-25 06:36:33.274][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-25 06:36:33.275][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:33.276][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:33.277][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:33.278][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-25 06:36:33.284][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-01-25 06:36:33.293][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1456.tsv"
biodb.DEBUG[2022-01-25 06:36:33.297][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-25 06:36:33.306][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:33.307][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-25 06:36:33.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:33.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:33.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:33.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:33.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.366][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.370][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.398][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.402][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:33.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:33.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:33.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:33.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:33.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:33.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:33.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:33.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:33.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:33.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.634][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.664][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:33.743][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-25 06:36:33.754][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:33.756][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-01-25 06:36:33.760][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-25 06:36:33.761][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-25 06:36:33.763][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-25 06:36:33.764][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-25 06:36:33.765][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-25 06:36:33.766][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-25 06:36:33.767][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:33.768][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:33.769][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:33.770][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-25 06:36:33.777][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-01-25 06:36:33.786][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1456.tsv"
biodb.DEBUG[2022-01-25 06:36:33.791][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-25 06:36:33.800][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:33.801][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-25 06:36:33.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:33.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:33.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:33.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:33.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:33.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:33.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:33.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:33.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:33.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:33.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:33.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:33.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:33.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:34.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:34.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.033][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:34.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:34.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:34.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:34.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:34.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:34.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:34.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.133][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:34.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:34.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:34.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:34.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.250][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-25 06:36:34.262][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:34.264][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:34.268][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-01-25 06:36:34.269][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-01-25 06:36:34.270][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-25 06:36:34.270][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.272][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-25 06:36:34.279][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:34.280][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-25 06:36:34.284][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:34.285][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-25 06:36:34.286][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-25 06:36:34.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.290][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-25 06:36:34.291][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-25 06:36:34.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.294][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-25 06:36:34.295][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-25 06:36:34.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.298][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-25 06:36:34.299][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-25 06:36:34.300][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-25 06:36:34.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.304][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-25 06:36:34.304][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-25 06:36:34.305][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-25 06:36:34.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.309][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-25 06:36:34.310][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-25 06:36:34.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.313][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-25 06:36:34.314][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-25 06:36:34.315][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-25 06:36:34.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.318][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-25 06:36:34.319][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-25 06:36:34.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.323][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-25 06:36:34.324][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-25 06:36:34.325][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-25 06:36:34.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.328][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:34.329][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-25 06:36:34.330][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-25 06:36:34.331][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-25 06:36:34.332][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-25 06:36:34.333][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-25 06:36:34.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.336][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-25 06:36:34.337][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-25 06:36:34.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.346][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-25 06:36:34.347][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-25 06:36:34.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.352][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-25 06:36:34.353][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-25 06:36:34.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.356][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-25 06:36:34.357][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-25 06:36:34.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.361][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-25 06:36:34.362][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-25 06:36:34.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.365][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:34.366][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-25 06:36:34.370][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-01-25 06:36:34.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.374][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-25 06:36:34.375][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-25 06:36:34.376][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-25 06:36:34.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.379][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:34.381][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.382][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-25 06:36:34.383][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.384][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:34.385][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.386][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.387][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.388][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.389][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:34.390][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:34.391][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.392][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-25 06:36:34.392][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:34.393][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.394][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.395][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:34.395][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:34.395][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:34.395][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:34.395][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:34.396][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:34.397][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:34.398][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:34.399][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:34.400][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:34.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:34.402][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.403][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.403][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:34.404][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:34.405][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.406][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.407][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-25 06:36:34.409][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.410][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:34.411][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.412][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:34.413][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.414][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.414][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.415][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.416][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:34.417][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:34.418][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.419][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-25 06:36:34.420][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:34.421][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.422][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.423][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:34.423][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:34.423][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:34.423][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:34.423][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:34.424][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:34.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:34.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:34.426][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:34.427][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:34.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:34.429][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.430][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.431][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:34.431][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:34.432][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.433][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.434][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:34.436][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.437][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-25 06:36:34.438][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.439][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:34.440][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.440][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.441][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.442][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.443][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:34.444][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:34.445][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.446][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-25 06:36:34.447][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:34.448][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.449][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.449][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.450][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:34.451][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:34.452][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:34.453][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:34.454][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:34.455][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:34.456][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.457][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.458][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:34.459][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:34.459][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.460][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.462][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-25 06:36:34.463][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.464][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:34.465][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.466][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:34.467][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.468][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.469][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.470][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.471][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:34.472][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:34.473][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.473][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-25 06:36:34.474][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:34.475][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.476][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:34.477][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.478][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:34.479][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:34.480][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:34.481][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:34.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:34.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:34.484][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:34.491][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.493][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:34.494][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:34.495][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:34.496][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:34.498][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:34.499][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.572][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-25 06:36:34.574][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-25 06:36:34.576][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-25 06:36:34.578][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-25 06:36:34.580][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-25 06:36:34.582][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-25 06:36:34.584][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:34.587][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:34.589][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-25 06:36:34.590][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-25 06:36:34.591][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-25 06:36:34.593][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-25 06:36:34.594][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:34.595][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:34.597][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-25 06:36:34.598][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-25 06:36:34.599][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-25 06:36:34.601][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-25 06:36:34.602][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-25 06:36:34.603][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-25 06:36:34.605][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-25 06:36:34.606][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-25 06:36:34.607][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-25 06:36:34.608][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-25 06:36:34.610][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-25 06:36:34.611][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-25 06:36:34.612][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-25 06:36:34.614][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-25 06:36:34.615][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-25 06:36:34.616][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-25 06:36:34.617][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-25 06:36:34.619][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-25 06:36:34.620][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-25 06:36:34.621][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-25 06:36:34.623][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-25 06:36:34.624][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-25 06:36:34.625][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-25 06:36:34.627][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-25 06:36:34.628][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-25 06:36:34.629][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-25 06:36:34.631][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-25 06:36:34.637][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-25 06:36:34.638][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-25 06:36:34.640][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-25 06:36:34.641][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-25 06:36:34.643][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-25 06:36:34.644][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-25 06:36:34.645][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-25 06:36:34.647][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-25 06:36:34.648][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-25 06:36:34.649][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-25 06:36:34.651][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-25 06:36:34.652][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-25 06:36:34.653][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-25 06:36:34.654][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-25 06:36:34.656][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-25 06:36:34.657][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-25 06:36:34.658][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-25 06:36:34.659][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-25 06:36:34.660][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-25 06:36:34.662][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-25 06:36:34.663][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-25 06:36:34.664][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-25 06:36:34.666][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-25 06:36:34.667][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-25 06:36:34.668][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-25 06:36:34.669][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-25 06:36:34.671][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-25 06:36:34.672][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-25 06:36:34.673][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-25 06:36:34.675][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-25 06:36:34.676][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-25 06:36:34.677][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-25 06:36:34.678][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-25 06:36:34.680][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-25 06:36:34.681][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-25 06:36:34.682][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-25 06:36:34.684][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-25 06:36:34.685][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-25 06:36:34.686][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-25 06:36:34.687][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-25 06:36:34.689][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-25 06:36:34.690][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-25 06:36:34.691][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-25 06:36:34.693][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:34.694][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2022-01-25 06:36:34.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:34.699][biodb$getConfig()$set] Set key persistent.cache.impl to "bioc".
biodb.DEBUG[2022-01-25 06:36:34.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:34.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:34.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:34.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:34.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-25 06:36:34.705][biodb$getPersistentCache()$erase] Erasing cache "/home/biocbuild/.cache/R/biodb".
biodb.DEBUG[2022-01-25 06:36:34.708][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:34.710][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-01-25 06:36:34.711][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:34.712][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2022-01-25 06:36:34.713][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:34.713][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:34.728][private$initDb] Loading file database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:34.731][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-25 06:36:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.736][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:34.737][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-25 06:36:34.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:34.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.742][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:34.742][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:34.743][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:34.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:34.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:34.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:34.748][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:34.749][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-01-25 06:36:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:34.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:34.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.754][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:34.754][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:34.754][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:34.754][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:34.755][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:34.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:34.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.760][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:34.760][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:34.760][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:34.760][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:34.760][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:34.761][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-01-25 06:36:34.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:34.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.765][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:34.765][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:34.765][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:34.765][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:34.765][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:34.765][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:34.772][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2022-01-25 06:36:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.778][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:34.778][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:34.778][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:34.778][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:34.778][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:34.778][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:34.778][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:34.779][self$setField] Set field description to column(s) description.
biodb.TRACE[2022-01-25 06:36:34.780][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:34.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:34.784][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:34.784][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:34.784][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:34.784][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:34.784][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:34.784][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:34.784][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:34.784][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:34.795][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-25 06:36:34.796][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-25 06:36:34.798][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-25 06:36:34.799][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-25 06:36:34.800][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-25 06:36:34.801][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-25 06:36:34.802][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:34.803][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:34.804][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:34.805][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-25 06:36:34.811][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-01-25 06:36:34.817][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-01-25 06:36:35.644][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-25 06:36:35.654][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:35.655][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-25 06:36:35.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:35.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:35.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:35.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:35.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:35.664][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:35.664][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:35.664][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:35.664][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:35.664][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:35.664][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:35.664][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:35.664][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:35.665][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:35.665][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:35.665][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:35.665][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:35.665][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:35.665][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:35.665][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:35.665][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:35.666][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:35.666][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:35.666][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:35.666][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:35.666][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:35.666][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:35.666][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:35.666][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:35.667][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:35.667][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:35.667][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:35.667][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:35.667][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:35.667][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:35.667][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:35.667][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:35.668][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:35.668][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:35.668][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:35.668][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:35.668][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:35.668][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:35.668][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:35.668][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:35.669][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:35.669][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:35.669][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:35.669][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:35.669][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:35.669][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:35.669][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:35.669][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:35.670][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:35.670][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:35.670][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:35.670][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:35.670][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:35.670][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:35.670][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:35.670][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-01-25 06:36:35.671][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:35.671][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:35.671][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:35.671][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:35.671][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-01-25 06:36:35.671][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-01-25 06:36:35.671][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-01-25 06:36:35.671][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2022-01-25 06:36:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:35.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:35.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:35.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:35.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:35.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:35.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:35.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:35.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:35.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.758][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:35.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.762][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:35.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:35.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:35.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:35.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:35.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:35.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:35.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:35.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:35.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:35.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:35.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:35.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:35.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:35.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:35.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:35.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:35.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:35.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:35.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:35.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:35.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:35.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:35.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:35.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.912][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:35.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:35.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:35.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:35.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:35.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:35.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:35.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:36.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:36.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:36.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:36.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:36.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:36.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:36.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.036][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:36.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:36.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:36.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:36.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:36.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:36.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.072][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:36.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:36.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:36.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:36.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:36.149][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2022-01-25 06:36:36.512][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^(.*)\.tsv$
biodb.DEBUG[2022-01-25 06:36:36.513][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2022-01-25 06:36:36.517][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:36.518][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2022-01-25 06:36:36.519][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:36.520][biodb::testThat] 
biodb.WARN [2022-01-25 06:36:36.522][self$getFolderPath] No cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2022-01-25 06:36:36.525][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:36.526][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2022-01-25 06:36:36.527][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:36.528][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:36.713][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:36.718][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:36.719][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2022-01-25 06:36:36.720][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:36.721][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:36.725][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:36.726][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2022-01-25 06:36:36.727][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:36.728][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:36.735][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-25 06:36:36.737][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-25 06:36:36.739][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-25 06:36:36.740][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-25 06:36:36.741][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-25 06:36:36.742][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-25 06:36:36.744][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:36.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:36.746][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:36.747][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-25 06:36:36.753][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-01-25 06:36:36.758][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-01-25 06:36:37.483][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-25 06:36:37.493][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:37.494][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-25 06:36:37.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:37.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:37.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:37.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:37.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:37.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:37.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:37.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:37.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:37.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:37.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:37.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:37.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:37.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:37.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:37.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:37.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:37.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.681][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:37.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:37.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:37.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:37.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:37.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.717][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:37.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.722][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:37.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:37.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:37.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:37.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:37.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:37.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:37.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:37.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:37.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:37.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:37.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:37.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:37.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:37.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:37.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:37.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:37.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:37.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:37.939][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-25 06:36:37.943][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:37.948][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:37.949][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2022-01-25 06:36:37.950][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:37.950][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:37.953][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-25 06:36:37.954][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-25 06:36:37.956][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-25 06:36:37.957][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-25 06:36:37.958][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-25 06:36:37.959][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-25 06:36:37.960][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:37.961][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:37.962][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:37.963][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-25 06:36:37.969][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-01-25 06:36:37.980][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-01-25 06:36:38.940][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-25 06:36:38.951][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:38.952][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-25 06:36:38.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:38.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:38.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:38.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:38.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:38.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:38.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:38.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:38.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:38.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:38.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:38.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:38.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:38.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:38.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:39.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:39.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:39.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:39.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.050][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:39.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:39.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:39.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:39.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:39.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:39.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:39.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:39.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:39.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:39.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:39.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:39.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:39.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:39.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:39.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:39.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:39.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:39.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:39.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:39.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:39.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:39.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:39.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:39.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:39.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.325][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:39.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:39.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:39.396][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-25 06:36:39.579][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-01-25 06:36:39.583][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-01-25 06:36:39.584][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-25 06:36:39.586][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-01-25 06:36:39.587][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-01-25 06:36:39.588][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-25 06:36:39.589][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-01-25 06:36:39.590][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-01-25 06:36:39.591][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:39.592][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:39.592][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-01-25 06:36:39.598][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-01-25 06:36:39.605][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-01-25 06:36:40.365][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-25 06:36:40.377][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:40.378][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-01-25 06:36:40.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:40.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:40.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:40.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:40.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:40.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.435][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:40.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:40.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:40.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:40.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:40.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:40.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:40.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:40.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:40.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:40.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:40.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.567][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:40.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.597][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:40.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:40.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:40.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:40.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:40.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:40.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-25 06:36:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-25 06:36:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.679][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-25 06:36:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-25 06:36:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-25 06:36:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-25 06:36:40.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-25 06:36:40.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-01-25 06:36:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-01-25 06:36:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-01-25 06:36:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:40.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:40.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:40.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:40.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:40.781][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-01-25 06:36:40.947][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-01-25 06:36:40.951][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-01-25 06:36:40.952][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-01-25 06:36:40.953][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-25 06:36:40.954][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:40.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:40.955][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-25 06:36:40.966][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-25 06:36:40.968][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-25 06:36:40.972][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:40.972][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-25 06:36:40.973][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-25 06:36:40.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:40.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:40.977][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-25 06:36:40.978][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-25 06:36:40.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:40.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:40.981][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-25 06:36:40.982][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-25 06:36:40.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:40.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:40.985][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-25 06:36:40.986][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-25 06:36:40.987][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-25 06:36:40.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:40.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:40.990][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-25 06:36:40.991][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-25 06:36:40.992][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-25 06:36:40.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:40.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:40.996][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-25 06:36:40.997][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-25 06:36:40.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:40.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:40.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.000][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-25 06:36:41.001][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-25 06:36:41.002][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-25 06:36:41.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.005][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-25 06:36:41.006][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-25 06:36:41.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.009][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-25 06:36:41.010][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-25 06:36:41.011][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-25 06:36:41.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.014][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:41.015][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-25 06:36:41.016][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-25 06:36:41.016][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-25 06:36:41.020][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-25 06:36:41.021][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-25 06:36:41.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.024][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-25 06:36:41.025][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-25 06:36:41.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.028][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-25 06:36:41.029][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-25 06:36:41.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.032][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-25 06:36:41.033][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-25 06:36:41.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.036][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-25 06:36:41.037][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-25 06:36:41.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.040][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-25 06:36:41.041][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-25 06:36:41.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.044][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-25 06:36:41.045][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-25 06:36:41.049][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-01-25 06:36:41.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.052][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-25 06:36:41.053][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-25 06:36:41.053][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-25 06:36:41.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.057][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-25 06:36:41.058][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.059][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-25 06:36:41.060][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.061][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:41.062][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.063][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.064][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.065][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.065][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:41.066][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:41.067][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.068][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-25 06:36:41.069][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:41.070][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.071][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.071][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:41.071][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:41.071][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:41.071][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:41.071][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:41.072][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:41.073][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:41.074][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:41.075][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:41.075][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:41.076][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:41.077][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.078][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.079][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:41.080][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:41.081][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.082][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.083][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-25 06:36:41.084][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.085][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:41.086][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.087][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:41.088][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.089][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.090][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.091][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.091][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:41.092][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:41.093][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.094][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-25 06:36:41.095][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:41.096][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.097][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.098][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-25 06:36:41.098][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-25 06:36:41.098][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-25 06:36:41.098][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-25 06:36:41.098][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-25 06:36:41.098][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:41.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:41.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:41.101][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:41.102][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:41.102][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:41.103][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.104][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.105][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:41.106][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:41.107][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.107][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.108][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:41.110][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.111][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-25 06:36:41.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.113][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:41.114][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.114][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.115][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.116][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.117][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-25 06:36:41.118][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:41.119][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.119][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-25 06:36:41.120][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:41.121][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.122][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.123][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.124][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:41.125][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:41.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:41.126][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:41.127][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:41.128][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:41.129][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.129][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.130][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:41.131][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:41.132][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.133][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.134][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-25 06:36:41.135][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.136][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-25 06:36:41.137][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.138][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-25 06:36:41.139][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.140][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.140][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.141][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.142][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-25 06:36:41.143][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-25 06:36:41.144][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.145][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-25 06:36:41.146][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-25 06:36:41.146][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.147][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-25 06:36:41.148][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.149][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-25 06:36:41.150][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:41.151][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:41.152][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-25 06:36:41.153][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-25 06:36:41.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-25 06:36:41.154][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-25 06:36:41.155][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.156][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-25 06:36:41.157][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-25 06:36:41.157][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-25 06:36:41.158][self$setPropertyValue] 
biodb.DEBUG[2022-01-25 06:36:41.160][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-25 06:36:41.160][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-25 06:36:41.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.234][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-25 06:36:41.235][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-25 06:36:41.237][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-25 06:36:41.238][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-25 06:36:41.239][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-25 06:36:41.240][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-25 06:36:41.242][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:41.243][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:41.244][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-25 06:36:41.245][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-25 06:36:41.247][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-25 06:36:41.248][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-25 06:36:41.249][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-25 06:36:41.250][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-25 06:36:41.252][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-25 06:36:41.253][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-25 06:36:41.254][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-25 06:36:41.256][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-25 06:36:41.257][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-25 06:36:41.258][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-25 06:36:41.259][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-25 06:36:41.260][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-25 06:36:41.262][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-25 06:36:41.263][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-25 06:36:41.264][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-25 06:36:41.265][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-25 06:36:41.267][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-25 06:36:41.268][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-25 06:36:41.269][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-25 06:36:41.270][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-25 06:36:41.271][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-25 06:36:41.273][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-25 06:36:41.274][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-25 06:36:41.275][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-25 06:36:41.276][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-25 06:36:41.277][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-25 06:36:41.279][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-25 06:36:41.280][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-25 06:36:41.281][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-25 06:36:41.282][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-25 06:36:41.284][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-25 06:36:41.285][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-25 06:36:41.286][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-25 06:36:41.287][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-25 06:36:41.288][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-25 06:36:41.290][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-25 06:36:41.292][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-25 06:36:41.295][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-25 06:36:41.296][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-25 06:36:41.298][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-25 06:36:41.299][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-25 06:36:41.300][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-25 06:36:41.302][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-25 06:36:41.303][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-25 06:36:41.304][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-25 06:36:41.305][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-25 06:36:41.307][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-25 06:36:41.308][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-25 06:36:41.309][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-25 06:36:41.310][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-25 06:36:41.311][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-25 06:36:41.312][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-25 06:36:41.314][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-25 06:36:41.315][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-25 06:36:41.316][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-25 06:36:41.317][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-25 06:36:41.319][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-25 06:36:41.320][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-25 06:36:41.321][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-25 06:36:41.322][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-25 06:36:41.323][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-25 06:36:41.325][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-25 06:36:41.326][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-25 06:36:41.327][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-25 06:36:41.328][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-25 06:36:41.329][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-25 06:36:41.331][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-25 06:36:41.332][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-25 06:36:41.333][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-25 06:36:41.335][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-25 06:36:41.336][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-25 06:36:41.337][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-25 06:36:41.338][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-25 06:36:41.340][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-25 06:36:41.341][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-01-25 06:36:41.342][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:41.343][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:41.344][biodb::testContext] Test context - Test BiodbMain instance.
biodb.INFO [2022-01-25 06:36:41.345][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-25 06:36:41.346][biodb::testContext] 
biodb.INFO [2022-01-25 06:36:41.347][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:41.348][biodb::testThat] Running test function  test.convertEntryIdFieldToDbClass  (" convertEntryIdFieldToDbClass() works correctly. ").
biodb.INFO [2022-01-25 06:36:41.349][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:41.349][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:41.360][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:41.361][biodb::testThat] Running test function  test.collapseRows  (" collapseRows() works correctly. ").
biodb.INFO [2022-01-25 06:36:41.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:41.363][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:41.407][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:41.408][biodb::testThat] Running test function  test.entriesToDataframe  (" entriesToDataframe() works correctly. ").
biodb.INFO [2022-01-25 06:36:41.409][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:41.410][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:41.414][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:41.415][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-01-25 06:36:41.417][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-25 06:36:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:41.422][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:41.450][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-25 06:36:41.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:41.455][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:41.455][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:41.456][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2022-01-25 06:36:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:41.461][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:41.461][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:41.461][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-25 06:36:41.464][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2022-01-25 06:36:41.465][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2022-01-25 06:36:41.467][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-01-25 06:36:41.468][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:41.469][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:41.470][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2022-01-25 06:36:41.474][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2022-01-25 06:36:41.483][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:41.484][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2022-01-25 06:36:41.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:41.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:41.491][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:41.491][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:41.491][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-25 06:36:41.492][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:41.492][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:41.492][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-25 06:36:41.493][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:41.493][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:41.493][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2022-01-25 06:36:41.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.509][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.516][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.519][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.526][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.575][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.581][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.582][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-25 06:36:41.583][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:41.584][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-25 06:36:41.585][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.587][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.588][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.591][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.592][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.593][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.594][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.595][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.596][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.597][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-25 06:36:41.597][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-25 06:36:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:41.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:41.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:41.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.666][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.687][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.736][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.737][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-25 06:36:41.738][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:41.738][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-25 06:36:41.739][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.742][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.743][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.745][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.746][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.747][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.749][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.750][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.751][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.751][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-25 06:36:41.752][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-25 06:36:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:41.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.764][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.768][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:41.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:41.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:41.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:41.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:41.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:41.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.849][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:41.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:41.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.871][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:41.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.885][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.886][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-25 06:36:41.887][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:41.887][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-25 06:36:41.888][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.891][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.892][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:41.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:41.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.894][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.895][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.896][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.898][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.899][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.899][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:41.900][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-25 06:36:41.901][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-25 06:36:41.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:41.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:41.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:41.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:41.982][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2022-01-25 06:36:42.006][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-25 06:36:42.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.048][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.050][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.052][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.053][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.056][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.057][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.060][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.060][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.070][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.071][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.074][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.075][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-25 06:36:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2022-01-25 06:36:42.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.101][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.102][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.103][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.105][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.106][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.108][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.109][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.112][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.113][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.114][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.115][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.118][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.118][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-25 06:36:42.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2022-01-25 06:36:42.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.143][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.144][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.147][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.148][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.150][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.151][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.154][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.155][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.156][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.157][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.159][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.160][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-25 06:36:42.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2022-01-25 06:36:42.173][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-25 06:36:42.174][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-01-25 06:36:42.177][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-25 06:36:42.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.210][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.211][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.213][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.214][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.217][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.218][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.220][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.221][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.222][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.223][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.225][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.226][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-25 06:36:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2022-01-25 06:36:42.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.249][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.250][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.251][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.252][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.253][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.256][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.257][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.259][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.260][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.261][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.262][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.264][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.265][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-25 06:36:42.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2022-01-25 06:36:42.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.294][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.295][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.296][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.297][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.298][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.299][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.301][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.302][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.304][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.305][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.306][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-01-25 06:36:42.307][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.309][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.310][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-01-25 06:36:42.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2022-01-25 06:36:42.323][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-25 06:36:42.323][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-01-25 06:36:42.326][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-25 06:36:42.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.345][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.346][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.348][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.349][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.351][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.352][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.355][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.356][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.358][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.359][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.360][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.361][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.362][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.363][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.364][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.366][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.367][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.370][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.370][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-01-25 06:36:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.394][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A1, C3H10N2].
biodb.DEBUG[2022-01-25 06:36:42.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.413][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.414][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.416][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.417][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.420][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.420][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.423][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.424][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.426][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.427][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.430][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.431][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.432][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.432][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.435][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.436][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.437][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.438][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.439][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-01-25 06:36:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A2, C6H12O6].
biodb.DEBUG[2022-01-25 06:36:42.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.480][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.481][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.484][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.484][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.487][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.488][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.490][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.491][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.492][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.494][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.494][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.497][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.498][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.499][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-01-25 06:36:42.500][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.502][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.503][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.506][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.506][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-01-25 06:36:42.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A3, C6H8O7].
biodb.DEBUG[2022-01-25 06:36:42.530][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-25 06:36:42.531][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-01-25 06:36:42.533][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-25 06:36:42.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.539][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.542][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.546][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.547][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.549][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.550][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.551][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.552][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.553][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.554][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.555][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.556][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.557][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.558][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-01-25 06:36:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.566][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [80].
biodb.DEBUG[2022-01-25 06:36:42.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.578][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.582][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.582][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.585][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.585][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.586][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.588][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.589][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.590][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.590][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.591][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.593][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.594][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-01-25 06:36:42.595][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [90].
biodb.DEBUG[2022-01-25 06:36:42.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.610][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.614][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.617][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.618][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:42.619][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.620][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.620][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.626][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.627][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.628][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.629][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.630][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-01-25 06:36:42.631][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.632][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.633][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.634][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-01-25 06:36:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [100;110].
biodb.DEBUG[2022-01-25 06:36:42.646][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-25 06:36:42.647][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2022-01-25 06:36:42.649][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-01-25 06:36:42.650][biodb::testThat] 
biodb.INFO [2022-01-25 06:36:42.651][biodb::testThat] Running test function  test.entriesToDataframe.listOfListInput  (" entriesToDataframe() handles list of list in input. ").
biodb.INFO [2022-01-25 06:36:42.652][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-25 06:36:42.653][biodb::testThat] 
biodb.DEBUG[2022-01-25 06:36:42.656][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-01-25 06:36:42.657][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-01-25 06:36:42.658][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-01-25 06:36:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:42.662][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:42.663][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-01-25 06:36:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:42.667][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:42.667][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:42.668][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2022-01-25 06:36:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:42.672][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:42.672][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:42.672][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-25 06:36:42.674][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2022-01-25 06:36:42.675][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2022-01-25 06:36:42.676][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-01-25 06:36:42.677][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-25 06:36:42.678][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-25 06:36:42.678][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2022-01-25 06:36:42.682][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2022-01-25 06:36:42.690][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2022-01-25 06:36:42.691][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2022-01-25 06:36:42.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:42.698][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:42.698][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:42.698][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-25 06:36:42.699][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:42.699][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:42.699][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-01-25 06:36:42.700][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-01-25 06:36:42.700][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-01-25 06:36:42.700][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2022-01-25 06:36:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:42.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:42.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.768][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.775][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:42.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:42.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.782][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:42.783][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-25 06:36:42.784][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.785][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.786][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.788][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.789][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.792][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.793][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.794][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.795][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.796][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:42.797][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:42.798][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-25 06:36:42.799][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-25 06:36:42.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:42.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:42.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:42.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.898][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:42.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:42.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:42.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:42.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:42.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.931][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:42.932][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-25 06:36:42.933][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:42.934][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-25 06:36:42.935][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.937][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.938][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:42.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:42.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.941][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.942][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.943][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.944][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.945][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:42.946][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:42.947][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-25 06:36:42.948][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-25 06:36:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:42.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:42.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:42.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:42.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:42.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:42.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:42.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:42.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:43.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.026][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.054][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:43.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:43.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-01-25 06:36:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-01-25 06:36:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.082][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:43.083][private$selectFields] Fields type: peak
biodb.TRACE[2022-01-25 06:36:43.084][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:43.085][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-01-25 06:36:43.085][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.086][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.088][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.089][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:43.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:43.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.092][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.092][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.093][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.095][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.096][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:43.097][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:43.098][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-01-25 06:36:43.098][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-01-25 06:36:43.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-01-25 06:36:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-01-25 06:36:43.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:43.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:43.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-01-25 06:36:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-25 06:36:43.175][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2022-01-25 06:36:43.176][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-25 06:36:43.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:43.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:43.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:43.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:43.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:43.182][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-01-25 06:36:43.183][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-01-25 06:36:43.184][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-01-25 06:36:43.185][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-01-25 06:36:43.187][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-25 06:36:43.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:43.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:43.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:43.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:43.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:43.193][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-01-25 06:36:43.194][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-01-25 06:36:43.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:43.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:43.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:43.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:43.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-25 06:36:43.200][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-01-25 06:36:43.201][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-01-25 06:36:43.201][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-01-25 06:36:43.202][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-01-25 06:36:43.205][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-25 06:36:43.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-25 06:36:43.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-25 06:36:43.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-25 06:36:43.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-25 06:36:43.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-25 06:36:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-25 06:36:43.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-25 06:36:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-25 06:36:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.226][private$selectFields] Fields none
biodb.TRACE[2022-01-25 06:36:43.227][private$selectFields] 
biodb.TRACE[2022-01-25 06:36:43.227][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-25 06:36:43.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-25 06:36:43.229][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2022-01-25 06:36:43.230][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.233][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.234][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:43.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:43.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.237][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.238][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.239][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.240][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.241][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-25 06:36:43.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-25 06:36:43.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.244][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.245][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-25 06:36:43.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-25 06:36:43.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.247][ef$get] fields variable is a list.
biodb.TRACE[2022-01-25 06:36:43.248][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.249][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-01-25 06:36:43.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-25 06:36:43.251][ef$get] fields variable is a list.
biod