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This page was generated on 2022-01-17 13:07:02 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for SingleCellSignalR on tokay2


To the developers/maintainers of the SingleCellSignalR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleCellSignalR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1806/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SingleCellSignalR 1.6.0  (landing page)
Jacques Colinge
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/SingleCellSignalR
git_branch: RELEASE_3_14
git_last_commit: dd12f95
git_last_commit_date: 2021-10-26 12:59:34 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: SingleCellSignalR
Version: 1.6.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SingleCellSignalR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings SingleCellSignalR_1.6.0.tar.gz
StartedAt: 2022-01-17 03:55:42 -0500 (Mon, 17 Jan 2022)
EndedAt: 2022-01-17 04:00:32 -0500 (Mon, 17 Jan 2022)
EllapsedTime: 290.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: SingleCellSignalR.Rcheck
Warnings: 1

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SingleCellSignalR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings SingleCellSignalR_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/SingleCellSignalR.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SingleCellSignalR/DESCRIPTION' ... OK
* this is package 'SingleCellSignalR' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SingleCellSignalR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 5.9 MB without LazyDataCompression set
  See ยง1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
intra_network 5.41   0.21    5.61
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/SingleCellSignalR.Rcheck/00check.log'
for details.



Installation output

SingleCellSignalR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SingleCellSignalR_1.6.0.tar.gz && rm -rf SingleCellSignalR.buildbin-libdir && mkdir SingleCellSignalR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SingleCellSignalR.buildbin-libdir SingleCellSignalR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SingleCellSignalR_1.6.0.zip && rm SingleCellSignalR_1.6.0.tar.gz SingleCellSignalR_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3774k  100 3774k    0     0  5408k      0 --:--:-- --:--:-- --:--:-- 5414k

install for i386

* installing *source* package 'SingleCellSignalR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SingleCellSignalR'
    finding HTML links ... done
    LRdb                                    html  
    LRscore                                 html  
    PwC_ReactomeKEGG                        html  
    cell_classifier                         html  
    cell_signaling                          html  
    cluster_analysis                        html  
    clustering                              html  
    data_prepare                            html  
    example_dataset                         html  
    expression_plot                         html  
    expression_plot_2                       html  
    inter_network                           html  
    intra_network                           html  
    markers                                 html  
    markers_default                         html  
    mm2Hs                                   html  
    mv_interactions                         html  
    simplify_interactions                   html  
    visualize_interactions                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SingleCellSignalR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SingleCellSignalR' as SingleCellSignalR_1.6.0.zip
* DONE (SingleCellSignalR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'SingleCellSignalR' successfully unpacked and MD5 sums checked

Tests output


Example timings

SingleCellSignalR.Rcheck/examples_i386/SingleCellSignalR-Ex.timings

nameusersystemelapsed
LRscore000
cell_classifier0.090.020.11
cell_signaling0.020.010.03
cluster_analysis000
clustering0.670.020.69
data_prepare0.030.000.03
expression_plot000
expression_plot_20.020.000.01
inter_network000
intra_network4.310.404.72
markers000
mv_interactions000
simplify_interactions0.000.020.02
visualize_interactions0.270.030.33

SingleCellSignalR.Rcheck/examples_x64/SingleCellSignalR-Ex.timings

nameusersystemelapsed
LRscore000
cell_classifier0.120.020.14
cell_signaling0.030.000.03
cluster_analysis000
clustering0.690.040.73
data_prepare0.030.000.03
expression_plot0.020.000.02
expression_plot_20.040.000.04
inter_network000
intra_network5.410.215.61
markers000
mv_interactions000
simplify_interactions000
visualize_interactions0.230.000.24