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This page was generated on 2022-01-26 13:07:17 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for RVS on tokay2


To the developers/maintainers of the RVS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RVS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1683/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RVS 1.16.0  (landing page)
Thomas Sherman
Snapshot Date: 2022-01-25 01:55:07 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/RVS
git_branch: RELEASE_3_14
git_last_commit: 235dff2
git_last_commit_date: 2021-10-26 12:36:59 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RVS
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RVS_1.16.0.tar.gz && rm -rf RVS.buildbin-libdir && mkdir RVS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RVS.buildbin-libdir RVS_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RVS_1.16.0.zip && rm RVS_1.16.0.tar.gz RVS_1.16.0.zip
StartedAt: 2022-01-25 04:40:11 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 04:42:50 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 159.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RVS_1.16.0.tar.gz && rm -rf RVS.buildbin-libdir && mkdir RVS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RVS.buildbin-libdir RVS_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RVS_1.16.0.zip && rm RVS_1.16.0.tar.gz RVS_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  756k  100  756k    0     0  1701k      0 --:--:-- --:--:-- --:--:-- 1707k

install for i386

* installing *source* package 'RVS' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RVS'
    finding HTML links ... done
    ComputeKinshipPropCoef-methods          html  
    GeneDrop                                html  
    RVS                                     html  
    RVgene                                  html  
    RVsharing-methods                       html  
    SnpMatrixToCount                        html  
    ancestorDistance                        html  
    areMating                               html  
    checkArgs                               html  
    computePFU                              html  
    computePhiVec                           html  
    convertMatrix                           html  
    createNetwork                           html  
    denomProb                               html  
    enrichmentPValue                        html  
    enrichmentPValue_R_Backend              html  
    ex.ped.mat                              html  
    exactSharingProb                        html  
    extract_carriers                        html  
    fam15157.vcf                            html  
    fam28003.vcf                            html  
    founderOccurence                        html  
    get.psubset                             html  
    inferNumAlleles                         html  
    inferTheta                              html  
    isDescendant                            html  
    marginalProb                            html  
    monteCarloSharingProb                   html  
    multipleFamilyPValue                    html  
    multipleFamilyPValue_R_Backend          html  
    multipleVariantPValue                   html  
    multipleVariantPValue_R_Backend         html  
    numerProb                               html  
    oldArgs                                 html  
    oneFounderSharingProb                   html  
    oneFounderSharingProbSplitting          html  
    ped2trio                                html  
    processPedigree-methods                 html  
    relatedFoundersCorrection               html  
    runMonteCarlo                           html  
    samplePedigrees                         html  
    simulatePedigree                        html  
    snpMat                                  html  
    twoFounderSharingProb                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RVS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RVS' as RVS_1.16.0.zip
* DONE (RVS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'RVS' successfully unpacked and MD5 sums checked