Multiple platform build/check report for BioC 3.14 - CHECK results for MatrixGenerics on tokay2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4324
tokay2	Windows Server 2012 R2 Standard	x64	4.1.3 (2022-03-10) -- "One Push-Up"	4077
machv2	macOS 10.14.6 Mojave	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4137
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: MatrixGenerics

Version: 1.6.0

Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MatrixGenerics.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MatrixGenerics_1.6.0.tar.gz

StartedAt: 2022-04-12 22:18:27 -0400 (Tue, 12 Apr 2022)

EndedAt: 2022-04-12 22:19:13 -0400 (Tue, 12 Apr 2022)

EllapsedTime: 46.4 seconds

RetCode: 0

Status: OK

CheckDir: MatrixGenerics.Rcheck

Warnings: 0

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MatrixGenerics.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MatrixGenerics_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MatrixGenerics.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MatrixGenerics/DESCRIPTION' ... OK
* this is package 'MatrixGenerics' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MatrixGenerics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  'methods:::fromNextMethod' 'methods:::getGenericFromCall'
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  '.load_next_suggested_package_to_search'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
colAvgsPerRowSet,ANY: no visible binding for global variable 'x'
colLogSumExps,ANY: no visible binding for global variable 'x'
rowAvgsPerColSet,ANY: no visible binding for global variable 'x'
rowLogSumExps,ANY: no visible binding for global variable 'x'
Undefined global functions or variables:
  x
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/MatrixGenerics.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MatrixGenerics_1.6.0.tar.gz && rm -rf MatrixGenerics.buildbin-libdir && mkdir MatrixGenerics.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MatrixGenerics.buildbin-libdir MatrixGenerics_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MatrixGenerics_1.6.0.zip && rm MatrixGenerics_1.6.0.tar.gz MatrixGenerics_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 32674  100 32674    0     0   209k      0 --:--:-- --:--:-- --:--:--  209k

install for i386

* installing *source* package 'MatrixGenerics' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MatrixGenerics'
    finding HTML links ... done
    MatrixGenerics-package                  html  
    rowAlls                                 html  
    rowAnyNAs                               html  
    rowAnys                                 html  
    rowAvgsPerColSet                        html  
    rowCollapse                             html  
    rowCounts                               html  
    rowCummaxs                              html  
    rowCummins                              html  
    rowCumprods                             html  
    rowCumsums                              html  
    rowDiffs                                html  
    rowIQRDiffs                             html  
    rowIQRs                                 html  
    rowLogSumExps                           html  
    rowMadDiffs                             html  
    rowMads                                 html  
    rowMaxs                                 html  
    rowMeans2                               html  
    rowMedians                              html  
    rowMins                                 html  
    rowOrderStats                           html  
    rowProds                                html  
    rowQuantiles                            html  
    rowRanges                               html  
    rowRanks                                html  
    rowSdDiffs                              html  
    rowSds                                  html  
    rowSums2                                html  
    rowTabulates                            html  
    rowVarDiffs                             html  
    rowVars                                 html  
    rowWeightedMads                         html  
    rowWeightedMeans                        html  
    rowWeightedMedians                      html  
    rowWeightedSds                          html  
    rowWeightedVars                         html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MatrixGenerics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MatrixGenerics' as MatrixGenerics_1.6.0.zip
* DONE (MatrixGenerics)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MatrixGenerics' successfully unpacked and MD5 sums checked


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MatrixGenerics)
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

> 
> test_check("MatrixGenerics")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 310 ]
> 
> proc.time()
   user  system elapsed 
   1.50    0.14    1.64


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MatrixGenerics)
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

> 
> test_check("MatrixGenerics")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 310 ]
> 
> proc.time()
   user  system elapsed 
   1.76    0.17    2.21

name	user	system	elapsed
rowAlls	0	0	0
rowAnyNAs	0	0	0
rowAnys	0.01	0.00	0.02
rowAvgsPerColSet	0	0	0
rowCollapse	0	0	0
rowCounts	0	0	0
rowCummaxs	0	0	0
rowCummins	0	0	0
rowCumprods	0	0	0
rowCumsums	0.02	0.00	0.02
rowDiffs	0	0	0
rowIQRDiffs	0	0	0
rowIQRs	0	0	0
rowLogSumExps	0	0	0
rowMadDiffs	0.01	0.00	0.01
rowMads	0	0	0
rowMaxs	0	0	0
rowMeans2	0	0	0
rowMedians	0	0	0
rowMins	0	0	0
rowOrderStats	0	0	0
rowProds	0	0	0
rowQuantiles	0.02	0.00	0.02
rowRanges	0	0	0
rowRanks	0	0	0
rowSdDiffs	0	0	0
rowSds	0	0	0
rowSums2	0	0	0
rowTabulates	0.02	0.00	0.01
rowVarDiffs	0	0	0
rowVars	0	0	0
rowWeightedMads	0	0	0
rowWeightedMeans	0	0	0
rowWeightedMedians	0	0	0
rowWeightedSds	0	0	0
rowWeightedVars	0	0	0

name	user	system	elapsed
rowAlls	0.02	0.00	0.02
rowAnyNAs	0	0	0
rowAnys	0	0	0
rowAvgsPerColSet	0	0	0
rowCollapse	0	0	0
rowCounts	0	0	0
rowCummaxs	0	0	0
rowCummins	0.02	0.00	0.02
rowCumprods	0	0	0
rowCumsums	0	0	0
rowDiffs	0	0	0
rowIQRDiffs	0	0	0
rowIQRs	0.01	0.00	0.02
rowLogSumExps	0	0	0
rowMadDiffs	0	0	0
rowMads	0	0	0
rowMaxs	0	0	0
rowMeans2	0	0	0
rowMedians	0	0	0
rowMins	0	0	0
rowOrderStats	0	0	0
rowProds	0	0	0
rowQuantiles	0	0	0
rowRanges	0	0	0
rowRanks	0	0	0
rowSdDiffs	0	0	0
rowSds	0	0	0
rowSums2	0	0	0
rowTabulates	0	0	0
rowVarDiffs	0	0	0
rowVars	0	0	0
rowWeightedMads	0.02	0.00	0.01
rowWeightedMeans	0	0	0
rowWeightedMedians	0	0	0
rowWeightedSds	0	0	0
rowWeightedVars	0	0	0

CHECK results for MatrixGenerics on tokay2

Summary

Command output

Installation output

Tests output

Example timings