Multiple platform build/check report for BioC 3.14 - CHECK results for MatrixGenerics on machv2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4324
tokay2	Windows Server 2012 R2 Standard	x64	4.1.3 (2022-03-10) -- "One Push-Up"	4077
machv2	macOS 10.14.6 Mojave	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4137
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MatrixGenerics.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MatrixGenerics_1.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/MatrixGenerics.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MatrixGenerics/DESCRIPTION’ ... OK
* this is package ‘MatrixGenerics’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MatrixGenerics’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘methods:::fromNextMethod’ ‘methods:::getGenericFromCall’
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.load_next_suggested_package_to_search’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
colAvgsPerRowSet,ANY: no visible binding for global variable ‘x’
colLogSumExps,ANY: no visible binding for global variable ‘x’
rowAvgsPerColSet,ANY: no visible binding for global variable ‘x’
rowLogSumExps,ANY: no visible binding for global variable ‘x’
Undefined global functions or variables:
  x
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.14-bioc/meat/MatrixGenerics.Rcheck/00check.log’
for details.

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MatrixGenerics
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘MatrixGenerics’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MatrixGenerics)

Tests output


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MatrixGenerics)
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

> 
> test_check("MatrixGenerics")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 310 ]
> 
> proc.time()
   user  system elapsed 
  2.137   0.146   2.263

Example timings

name	user	system	elapsed
rowAlls	0.004	0.001	0.005
rowAnyNAs	0.009	0.001	0.010
rowAnys	0.001	0.000	0.002
rowAvgsPerColSet	0.002	0.001	0.003
rowCollapse	0.002	0.000	0.002
rowCounts	0.002	0.001	0.003
rowCummaxs	0.002	0.001	0.003
rowCummins	0.001	0.001	0.003
rowCumprods	0.002	0.002	0.004
rowCumsums	0.002	0.002	0.004
rowDiffs	0.002	0.001	0.003
rowIQRDiffs	0.005	0.001	0.007
rowIQRs	0.006	0.001	0.007
rowLogSumExps	0.002	0.001	0.003
rowMadDiffs	0.004	0.001	0.005
rowMads	0.001	0.001	0.002
rowMaxs	0.002	0.001	0.002
rowMeans2	0.002	0.000	0.002
rowMedians	0.001	0.001	0.002
rowMins	0.002	0.001	0.003
rowOrderStats	0.002	0.001	0.002
rowProds	0.002	0.001	0.003
rowQuantiles	0.007	0.002	0.008
rowRanges	0.002	0.001	0.003
rowRanks	0.002	0.001	0.002
rowSdDiffs	0.003	0.001	0.004
rowSds	0.002	0.001	0.003
rowSums2	0.002	0.000	0.002
rowTabulates	0.003	0.001	0.004
rowVarDiffs	0.003	0.000	0.004
rowVars	0.001	0.001	0.002
rowWeightedMads	0.003	0.001	0.005
rowWeightedMeans	0.003	0.001	0.004
rowWeightedMedians	0.002	0.001	0.003
rowWeightedSds	0.003	0.001	0.004
rowWeightedVars	0.006	0.001	0.007

CHECK results for MatrixGenerics on machv2

Summary

Command output

Installation output

Tests output

Example timings