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This page was generated on 2022-01-14 13:06:47 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for MSstatsTMTPTM on tokay2


To the developers/maintainers of the MSstatsTMTPTM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsTMTPTM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1236/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSstatsTMTPTM 1.4.0  (landing page)
Devon Kohler
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/MSstatsTMTPTM
git_branch: RELEASE_3_14
git_last_commit: 1f4a090
git_last_commit_date: 2021-10-26 13:03:49 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: MSstatsTMTPTM
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsTMTPTM_1.4.0.tar.gz && rm -rf MSstatsTMTPTM.buildbin-libdir && mkdir MSstatsTMTPTM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsTMTPTM.buildbin-libdir MSstatsTMTPTM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsTMTPTM_1.4.0.zip && rm MSstatsTMTPTM_1.4.0.tar.gz MSstatsTMTPTM_1.4.0.zip
StartedAt: 2022-01-13 05:14:44 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 05:15:58 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 73.2 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsTMTPTM_1.4.0.tar.gz && rm -rf MSstatsTMTPTM.buildbin-libdir && mkdir MSstatsTMTPTM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsTMTPTM.buildbin-libdir MSstatsTMTPTM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsTMTPTM_1.4.0.zip && rm MSstatsTMTPTM_1.4.0.tar.gz MSstatsTMTPTM_1.4.0.zip
###
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##############################################################################


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install for i386

* installing *source* package 'MSstatsTMTPTM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c model_adjust.cpp -o model_adjust.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsTMTPTM.dll tmp.def RcppExports.o model_adjust.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSstatsTMTPTM.buildbin-libdir/00LOCK-MSstatsTMTPTM/00new/MSstatsTMTPTM/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSstatsTMTPTM'
    finding HTML links ... done
    MSstatsTMTPTM                           html  
    dataProcessPlotsTMTPTM                  html  
    example.contrast.matrix                 html  
    groupComparisonTMTPTM                   html  
    model.results.contrast                  html  
    model.results.pairwise                  html  
    quant.msstats.protein                   html  
    quant.msstats.ptm                       html  
    raw.protein                             html  
    raw.ptm                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
  Bioconductor version 3.15
** testing if installed package can be loaded from final location
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
  Bioconductor version 3.15
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MSstatsTMTPTM' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c model_adjust.cpp -o model_adjust.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsTMTPTM.dll tmp.def RcppExports.o model_adjust.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSstatsTMTPTM.buildbin-libdir/MSstatsTMTPTM/libs/x64
** testing if installed package can be loaded
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
  Bioconductor version 3.15
* MD5 sums
packaged installation of 'MSstatsTMTPTM' as MSstatsTMTPTM_1.4.0.zip
* DONE (MSstatsTMTPTM)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MSstatsTMTPTM' successfully unpacked and MD5 sums checked