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This page was generated on 2022-01-14 13:05:28 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MSstatsTMTPTM on nebbiolo2


To the developers/maintainers of the MSstatsTMTPTM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsTMTPTM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1236/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSstatsTMTPTM 1.4.0  (landing page)
Devon Kohler
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/MSstatsTMTPTM
git_branch: RELEASE_3_14
git_last_commit: 1f4a090
git_last_commit_date: 2021-10-26 13:03:49 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: MSstatsTMTPTM
Version: 1.4.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsTMTPTM
StartedAt: 2022-01-13 04:56:29 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 04:56:52 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 22.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsTMTPTM
###
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* checking for file ‘MSstatsTMTPTM/DESCRIPTION’ ... OK
* preparing ‘MSstatsTMTPTM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MSstatsTMTPTM.Rmd’ using rmarkdown
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
  Bioconductor version 3.15
Quitting from lines 129-144 (MSstatsTMTPTM.Rmd) 
Error: processing vignette 'MSstatsTMTPTM.Rmd' failed with diagnostics:
Supplied 2 columns to be assigned 3 items. Please see NEWS for v1.12.2.
--- failed re-building ‘MSstatsTMTPTM.Rmd’

--- re-building ‘MSstatsTMTPTM.Workflow.rmd’ using rmarkdown

Attaching package: 'MSstats'

The following object is masked from 'package:grDevices':

    savePlot


Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 93-107 (MSstatsTMTPTM.Workflow.rmd) 
Error: processing vignette 'MSstatsTMTPTM.Workflow.rmd' failed with diagnostics:
Supplied 2 columns to be assigned 3 items. Please see NEWS for v1.12.2.
--- failed re-building ‘MSstatsTMTPTM.Workflow.rmd’

SUMMARY: processing the following files failed:
  ‘MSstatsTMTPTM.Rmd’ ‘MSstatsTMTPTM.Workflow.rmd’

Error: Vignette re-building failed.
Execution halted