Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-14 13:05:03 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CountClust on nebbiolo2


To the developers/maintainers of the CountClust package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CountClust.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 408/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CountClust 1.22.0  (landing page)
Kushal Dey
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/CountClust
git_branch: RELEASE_3_14
git_last_commit: a40f173
git_last_commit_date: 2021-10-26 12:26:27 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: CountClust
Version: 1.22.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CountClust
StartedAt: 2022-01-13 04:06:17 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 04:06:43 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 26.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CountClust
###
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* checking for file ‘CountClust/DESCRIPTION’ ... OK
* preparing ‘CountClust’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘count-clust.Rmd’ using rmarkdown
Loading required package: usethis
Downloading GitHub repo TaddyLab/maptpx@HEAD
Installing package into '/tmp/RtmpL6AkXL/Rinste773e11bb6577'
(as 'lib' is unspecified)
* installing *source* package ‘maptpx’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DRPRINT  -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DRPRINT  -fpic  -g -O2  -Wall -c latools.c -o latools.o
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DRPRINT  -fpic  -g -O2  -Wall -c rhelp.c -o rhelp.o
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DRPRINT  -fpic  -g -O2  -Wall -c topics.c -o topics.o
gcc -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o maptpx.so init.o latools.o rhelp.o topics.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.14-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /tmp/RtmpL6AkXL/Rinste773e11bb6577/00LOCK-maptpx/00new/maptpx/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maptpx)
Loading required package: ggplot2
Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda",  :
  cannot open URL 'https://cdn.jsdelivr.net/gh/kkdey/GTExV6Brain@master/data/GTExV6Brain.rda': HTTP status was '403 Forbidden'
Quitting from lines 118-130 (count-clust.Rmd) 
Error: processing vignette 'count-clust.Rmd' failed with diagnostics:
cannot open URL 'https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda'
--- failed re-building ‘count-clust.Rmd’

SUMMARY: processing the following file failed:
  ‘count-clust.Rmd’

Error: Vignette re-building failed.
Execution halted