Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:10 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for AnVILBilling on tokay2


To the developers/maintainers of the AnVILBilling package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnVILBilling.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 71/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnVILBilling 1.4.0  (landing page)
Vince Carey
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/AnVILBilling
git_branch: RELEASE_3_14
git_last_commit: 54f05b3
git_last_commit_date: 2021-10-26 13:04:23 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: AnVILBilling
Version: 1.4.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AnVILBilling.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings AnVILBilling_1.4.0.tar.gz
StartedAt: 2022-04-12 15:39:05 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 15:41:12 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 126.9 seconds
RetCode: 0
Status:   OK  
CheckDir: AnVILBilling.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AnVILBilling.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings AnVILBilling_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/AnVILBilling.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AnVILBilling/DESCRIPTION' ... OK
* this is package 'AnVILBilling' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AnVILBilling' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'kvpivot'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
brec_server: no visible binding for global variable 'usage_start_time'
brec_server: no visible binding for global variable 'cost'
brec_server: no visible binding for global variable 'res'
brec_server: no visible global function definition for 'sessionInfo'
getBilling: no visible binding for global variable 'usage_start_time'
getBilling: no visible binding for global variable 'usage_end_time'
oldbrowse_reck : server: no visible binding for global variable
  'usage_start_time'
oldbrowse_reck : server: no visible binding for global variable 'cost'
oldbrowse_reck : server: no visible binding for global variable 'res'
oldbrowse_reck : server: no visible global function definition for
  'sessionInfo'
Undefined global functions or variables:
  cost res sessionInfo usage_end_time usage_start_time
Consider adding
  importFrom("utils", "sessionInfo")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/AnVILBilling.Rcheck/00check.log'
for details.



Installation output

AnVILBilling.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/AnVILBilling_1.4.0.tar.gz && rm -rf AnVILBilling.buildbin-libdir && mkdir AnVILBilling.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AnVILBilling.buildbin-libdir AnVILBilling_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL AnVILBilling_1.4.0.zip && rm AnVILBilling_1.4.0.tar.gz AnVILBilling_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  532k    0  2489    0     0  29542      0  0:00:18 --:--:--  0:00:18 29630
100  532k  100  532k    0     0   555k      0 --:--:-- --:--:-- --:--:--  555k

install for i386

* installing *source* package 'AnVILBilling' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AnVILBilling'
    finding HTML links ... done
    ab_reckoning                            html  
    browse_reck                             html  
    browse_reck2                            html  
    demo_rec                                html  
    getBilling                              html  
    getKeys                                 html  
    getSkus                                 html  
    getSubmissionCost                       html  
    getSubmissionRam                        html  
    getValues                               html  
    reckon                                  html  
    reckoning-avReckoning-method            html  
    reckoning                               html  
    setup_billing_request                   html  
    subsetByKeyValue                        html  
    subsetBySku                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AnVILBilling' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AnVILBilling' as AnVILBilling_1.4.0.zip
* DONE (AnVILBilling)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'AnVILBilling' successfully unpacked and MD5 sums checked

Tests output

AnVILBilling.Rcheck/tests_i386/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(AnVILBilling)
> 
> test_check("AnVILBilling")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
> 
> proc.time()
   user  system elapsed 
   2.56    0.15    2.70 

AnVILBilling.Rcheck/tests_x64/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(AnVILBilling)
> 
> test_check("AnVILBilling")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
> 
> proc.time()
   user  system elapsed 
   2.54    0.18    2.70 

Example timings

AnVILBilling.Rcheck/examples_i386/AnVILBilling-Ex.timings

nameusersystemelapsed
ab_reckoning0.070.020.10
browse_reck000
demo_rec000
getBilling000
getSubmissionCost0.260.020.28
getSubmissionRam0.220.010.23
getValues000
reckon000
reckoning-avReckoning-method000
reckoning000
setup_billing_request000
subsetByKeyValue0.360.010.38

AnVILBilling.Rcheck/examples_x64/AnVILBilling-Ex.timings

nameusersystemelapsed
ab_reckoning0.050.000.05
browse_reck000
demo_rec0.020.000.01
getBilling000
getSubmissionCost0.120.040.16
getSubmissionRam0.170.000.18
getValues000
reckon000
reckoning-avReckoning-method000
reckoning000
setup_billing_request000
subsetByKeyValue0.230.010.25