Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:11 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ASpli on tokay2


To the developers/maintainers of the ASpli package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpli.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 90/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASpli 2.4.0  (landing page)
Estefania Mancini
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/ASpli
git_branch: RELEASE_3_14
git_last_commit: 9dad6f1
git_last_commit_date: 2021-10-26 12:29:18 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ASpli
Version: 2.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ASpli_2.4.0.tar.gz && rm -rf ASpli.buildbin-libdir && mkdir ASpli.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpli.buildbin-libdir ASpli_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ASpli_2.4.0.zip && rm ASpli_2.4.0.tar.gz ASpli_2.4.0.zip
StartedAt: 2022-04-12 07:15:48 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:18:55 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 186.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ASpli_2.4.0.tar.gz && rm -rf ASpli.buildbin-libdir && mkdir ASpli.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpli.buildbin-libdir ASpli_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ASpli_2.4.0.zip && rm ASpli_2.4.0.tar.gz ASpli_2.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3 4893k    3  183k    0     0   485k      0  0:00:10 --:--:--  0:00:10  485k
 27 4893k   27 1351k    0     0   979k      0  0:00:04  0:00:01  0:00:03  979k
 54 4893k   54 2654k    0     0  1114k      0  0:00:04  0:00:02  0:00:02 1114k
 93 4893k   93 4579k    0     0  1356k      0  0:00:03  0:00:03 --:--:-- 1356k
100 4893k  100 4893k    0     0  1402k      0  0:00:03  0:00:03 --:--:-- 1402k

install for i386

* installing *source* package 'ASpli' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ASpli'
    finding HTML links ... done
    ASpli-deprecated                        html  
    ASpli-package                           html  
    ASpliAS-class                           html  
    ASpliCounts-class                       html  
    ASpliCounts                             html  
    ASpliDU-class                           html  
    ASpliFeatures-class                     html  
    ASpliIntegratedSignals-class            html  
    ASpliJDU-class                          html  
    ASpliSplicingReport-class               html  
    DUreport                                html  
    finding level-2 HTML links ... done

    DUreport.norm                           html  
    DUreport.offset                         html  
    DUreportBinSplice-method                html  
    acc_AS                                  html  
    acc_DU                                  html  
    acc_JDU                                 html  
    acc_MergedReport                        html  
    acc_counts                              html  
    acc_features                            html  
    acc_is                                  html  
    binGenome-methods                       html  
    binGenome                               html  
    containsJunctions-function              html  
    example_data                            html  
    exportIntegratedSignals                 html  
    exportSplicingReports                   html  
    filterDU-method                         html  
    filterSignals                           html  
    gbCounts                                html  
    gbDUreport-method                       html  
    getConditions-function                  html  
    integrateSignals                        html  
    jCounts-methods                         html  
    jDUreport                               html  
    junctionDUreport                        html  
    loadBAM                                 html  
    mergeBinDUAS-method                     html  
    plotBins                                html  
    plotGenomicRegions                      html  
    rds                                     html  
    show-methods                            html  
    splicingReport                          html  
    subset-methods                          html  
    write-methods                           html  
    write                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_2.4.0.zip
* DONE (ASpli)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ASpli' successfully unpacked and MD5 sums checked