Olivier Gevaert
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/AMARETTO |
| git_branch: RELEASE_3_14 |
| git_last_commit: f2da2d8 |
| git_last_commit_date: 2021-10-26 12:50:18 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:09 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the AMARETTO package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AMARETTO.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 49/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AMARETTO 1.10.0 (landing page) Olivier Gevaert
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: AMARETTO |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/AMARETTO_1.10.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.10.0.zip && rm AMARETTO_1.10.0.tar.gz AMARETTO_1.10.0.zip |
| StartedAt: 2022-04-12 07:21:12 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:22:57 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 105.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/AMARETTO_1.10.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.10.0.zip && rm AMARETTO_1.10.0.tar.gz AMARETTO_1.10.0.zip
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100 5470k 100 5470k 0 0 2038k 0 0:00:02 0:00:02 --:--:-- 2038k
install for i386
* installing *source* package 'AMARETTO' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AMARETTO'
finding HTML links ... done
AMARETTO_CreateModuleData html
AMARETTO_CreateRegulatorPrograms html
AMARETTO_Download html
AMARETTO_EvaluateTestSet html
AMARETTO_ExportResults html
AMARETTO_HTMLreport html
AMARETTO_Initialize html
AMARETTO_LarsenBased html
AMARETTO_LearnRegulatoryProgramsLarsen
html
AMARETTO_Preprocess html
AMARETTO_ReassignGenesToClusters html
AMARETTO_Run html
AMARETTO_VisualizeModule html
BatchData html
Beta.NA html
ComBat_NoFiles html
CreateRegulatorData html
Driver_Genes html
FindTranscriptionallyPredictive_CNV html
GeneSetDescription html
GmtFromModules html
HyperGTestGeneEnrichment html
L html
Lambda_Sequence html
MsigdbMapping html
Preprocess_MAdata html
ProcessedDataLIHC html
Save_CancerSite html
TCGA_BatchCorrection_MolecularData html
TCGA_GENERIC_BatchCorrection html
TCGA_GENERIC_CheckBatchEffect html
TCGA_GENERIC_CleanUpSampleNames html
TCGA_GENERIC_GetSampleGroups html
TCGA_GENERIC_MergeData html
TCGA_Load_GISTICdata html
TCGA_Load_MolecularData html
aprior html
bprior html
build.design html
cacheResource html
computeGisticURL html
design.mat html
filter.absent html
geneFiltering html
get_firehoseData html
int.eprior html
it.sol html
list.batch html
plot_run_history html
postmean html
postvar html
printf html
readGMT html
read_gct html
trim.dat html
write_gct html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AMARETTO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AMARETTO' as AMARETTO_1.10.0.zip
* DONE (AMARETTO)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'AMARETTO' successfully unpacked and MD5 sums checked