Back to Multiple platform build/check report for BioC 3.14
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:06:09 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for AMARETTO on tokay2


To the developers/maintainers of the AMARETTO package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AMARETTO.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 49/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AMARETTO 1.10.0  (landing page)
Olivier Gevaert
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/AMARETTO
git_branch: RELEASE_3_14
git_last_commit: f2da2d8
git_last_commit_date: 2021-10-26 12:50:18 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: AMARETTO
Version: 1.10.0
Command: rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.10.0.tar.gz
StartedAt: 2022-04-13 05:35:05 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 05:36:43 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 97.2 seconds
RetCode: 0
Status:   OK  
PackageFile: AMARETTO_1.10.0.zip
PackageFileSize: 3.481 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.10.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'AMARETTO' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AMARETTO'
    finding HTML links ... done
    AMARETTO_CreateModuleData               html  
    AMARETTO_CreateRegulatorPrograms        html  
    AMARETTO_Download                       html  
    AMARETTO_EvaluateTestSet                html  
    AMARETTO_ExportResults                  html  
    AMARETTO_HTMLreport                     html  
    AMARETTO_Initialize                     html  
    AMARETTO_LarsenBased                    html  
    AMARETTO_LearnRegulatoryProgramsLarsen
                                            html  
    AMARETTO_Preprocess                     html  
    AMARETTO_ReassignGenesToClusters        html  
    AMARETTO_Run                            html  
    AMARETTO_VisualizeModule                html  
    BatchData                               html  
    Beta.NA                                 html  
    ComBat_NoFiles                          html  
    CreateRegulatorData                     html  
    Driver_Genes                            html  
    FindTranscriptionallyPredictive_CNV     html  
    GeneSetDescription                      html  
    GmtFromModules                          html  
    HyperGTestGeneEnrichment                html  
    L                                       html  
    Lambda_Sequence                         html  
    MsigdbMapping                           html  
    Preprocess_MAdata                       html  
    ProcessedDataLIHC                       html  
    Save_CancerSite                         html  
    TCGA_BatchCorrection_MolecularData      html  
    TCGA_GENERIC_BatchCorrection            html  
    TCGA_GENERIC_CheckBatchEffect           html  
    TCGA_GENERIC_CleanUpSampleNames         html  
    TCGA_GENERIC_GetSampleGroups            html  
    TCGA_GENERIC_MergeData                  html  
    TCGA_Load_GISTICdata                    html  
    TCGA_Load_MolecularData                 html  
    aprior                                  html  
    bprior                                  html  
    build.design                            html  
    cacheResource                           html  
    computeGisticURL                        html  
    design.mat                              html  
    filter.absent                           html  
    geneFiltering                           html  
    get_firehoseData                        html  
    int.eprior                              html  
    it.sol                                  html  
    list.batch                              html  
    plot_run_history                        html  
    postmean                                html  
    postvar                                 html  
    printf                                  html  
    readGMT                                 html  
    read_gct                                html  
    trim.dat                                html  
    write_gct                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AMARETTO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AMARETTO' as AMARETTO_1.10.0.zip
* DONE (AMARETTO)