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BUILD report for curatedCRCData on malbec2

This page was generated on 2021-01-21 16:01:06 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE curatedCRCData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 84/386HostnameOS / ArchINSTALLBUILDCHECK
curatedCRCData 2.23.0
Princy Parsana
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/curatedCRCData
Branch: master
Last Commit: 7453b6e
Last Changed Date: 2020-10-27 10:06:49 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK [ OK ] OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK 

Summary

Package: curatedCRCData
Version: 2.23.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedCRCData
StartedAt: 2021-01-21 10:33:14 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 10:34:52 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 97.9 seconds
RetCode: 0
Status:  OK 
PackageFile: curatedCRCData_2.23.0.tar.gz
PackageFileSize: 399 MiB

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedCRCData
###
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* checking for file ‘curatedCRCData/DESCRIPTION’ ... OK
* preparing ‘curatedCRCData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX ...
Creating pdf output from LaTeX ...

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/map/pdftex/updmap/pdftex.map}] [2]
Overfull \hbox (906.32828pt too wide) in paragraph at lines 96--96
 []  \T1/zi4/m/n/10 Experimenter name: Auman JT, Church R, Lee SY, Watson MA, F
leshman JW, Mcleod HL.??Celecoxib pre-treatment in human colorectal adenocarcin
oma patients is associated with gene expression alterations suggestive of dimin
ished cellular proliferation.??Eur J Cancer??2008 Aug[] 

Overfull \hbox (431.3794pt too wide) in paragraph at lines 99--99
 []  \T1/zi4/m/n/10 Title: Celecoxib pre-treatment in human colorectal adenocar
cinoma patients is associated with gene expression alterations suggestive of di
minished cellular proliferation.[] 
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [3] [4]
[5]
Overfull \hbox (523.0188pt too wide) in paragraph at lines 226--226
 []  \T1/zi4/m/n/10 Experimenter name: Lips EH, van Eijk R, de Graaf EJ, Oostin
g J et al.??Integrating chromosomal aberrations and gene expression profiles to
 dissect rectal tumorigenesis.BMC Cancer??2008 Oct 29[] 

Overfull \hbox (113.06992pt too wide) in paragraph at lines 229--229
 []  \T1/zi4/m/n/10 Title: Integrating chromosomal aberrations and gene express
ion profiles to dissect rectal tumorigenesis.[] 
[6] [7]
Overfull \hbox (613.00858pt too wide) in paragraph at lines 341--341
 []  \T1/zi4/m/n/10 Experimenter name: Staub E, Groene J, Heinze M, Mennerich D
 et al.??An expression module of WIPF1-coexpressed genes identifies patients wi
th favorable prognosis in three tumor types.??J Mol Med (Berl)??2009 Jun[] 

Overfull \hbox (191.38962pt too wide) in paragraph at lines 344--344
 []  \T1/zi4/m/n/10 Title: An expression module of WIPF1-coexpressed genes iden
tifies patients with favorable prognosis in three tumor types.[] 
[8] [9]
Underfull \vbox (badness 10000) has occurred while \output is active [10]
Overfull \hbox (5.87547pt too wide) in paragraph at lines 492--493
\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-

Overfull \hbox (694.67865pt too wide) in paragraph at lines 505--505
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman 
M et al.??DNA copy-number alterations underlie gene expression differences betw
een microsatellite stable and unstable colorectal cancers.??Clin Cancer Res??20
08 Dec 15[] 

Overfull \hbox (258.0597pt too wide) in paragraph at lines 508--508
 []  \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
 differences between microsatellite stable and unstable colorectal cancers.[] 
[11] [12]
Overfull \hbox (5.87547pt too wide) in paragraph at lines 578--579
\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-

Overfull \hbox (674.66843pt too wide) in paragraph at lines 591--591
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman 
M et al. DNA copy-number alterations underlie gene expression differences betwe
en microsatellite stable and unstable colorectal cancers. Clin Cancer Res 2008 
Dec 15[] 

Overfull \hbox (258.0597pt too wide) in paragraph at lines 594--594
 []  \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
 differences between microsatellite stable and unstable colorectal cancers.[] 
[13] [14]
Overfull \hbox (686.3385pt too wide) in paragraph at lines 677--677
 []  \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Yamamoto Y, Matsu
da K et al.??Gene expression signature and response to the use of leucovorin, f
luorouracil and oxaliplatin in colorectal cancer patients.??Clin Transl Oncol??
2011 Jun[] 

Overfull \hbox (238.04947pt too wide) in paragraph at lines 680--680
 []  \T1/zi4/m/n/10 Title: Gene expression signature and response to the use of
 leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.[] 
[15] [16]
Overfull \hbox (679.66843pt too wide) in paragraph at lines 759--759
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Gibbs P, Christie M, Prakas
h S et al.??Metastasis-Associated Gene Expression Changes Predict Poor Outcomes
 in Patients with Dukes Stage B and C Colorectal Cancer.??Clin Cancer Res??2009
 Dec 15[] 

Overfull \hbox (233.04947pt too wide) in paragraph at lines 762--762
 []  \T1/zi4/m/n/10 Title: Metastasis-Associated Gene Expression Changes Predic
t Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.[] 
[17] [18] [19]
Overfull \hbox (503.02902pt too wide) in paragraph at lines 897--897
 []  \T1/zi4/m/n/10 Experimenter name: Reid JF, Gariboldi M, Sokolova V, Capobi
anco P et al.??Integrative approach for prioritizing cancer genes in sporadic c
olon cancer.??Genes Chromosomes Cancer??2009 Nov[] 

Overfull \hbox (9.73999pt too wide) in paragraph at lines 900--900
 []  \T1/zi4/m/n/10 Title: Integrative approach for prioritizing cancer genes i
n sporadic colon cancer.[] 
[20] [21] [22]
Overfull \hbox (623.0188pt too wide) in paragraph at lines 1043--1043
 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1046--1046
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[23] [24]
Underfull \vbox (badness 10000) has occurred while \output is active [25]
Overfull \hbox (623.0188pt too wide) in paragraph at lines 1207--1207
 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1210--1210
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[26] [27]
Underfull \vbox (badness 10000) has occurred while \output is active [28]
Overfull \hbox (623.0188pt too wide) in paragraph at lines 1367--1367
 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 
[29]
Overfull \hbox (211.38962pt too wide) in paragraph at lines 1370--1370
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[30]
Underfull \vbox (badness 10000) has occurred while \output is active [31]
[32]
Overfull \hbox (579.66843pt too wide) in paragraph at lines 1523--1523
 []  \T1/zi4/m/n/10 Experimenter name: Matsuyama T, Ishikawa T, Mogushi K, Yosh
ida T et al.??MUC12 mRNA expression is an independent marker of prognosis in st
age II and stage III colorectal cancer.??Int J Cancer??2010 Nov 15[] 

Overfull \hbox (138.04947pt too wide) in paragraph at lines 1526--1526
 []  \T1/zi4/m/n/10 Title: MUC12 mRNA expression is an independent marker of pr
ognosis in stage II and stage III colorectal cancer.[] 
[33] [34]
Overfull \hbox (101.41006pt too wide) in paragraph at lines 1629--1629
 []  \T1/zi4/m/n/10 Experimenter name: EXpression Project for Oncology, Interna
tional Genomics Consortium, www.intgen.org[] 
[35]
Underfull \vbox (badness 10000) has occurred while \output is active [36]
Overfull \hbox (8.67705pt too wide) in paragraph at lines 1746--1747
[]\T1/ptm/m/n/10 This study aimed to iden-tify a novel biomarker or a tar-get o
f treat-ment for col-orec-tal can-cer (CRC).The

Overfull \hbox (463.02902pt too wide) in paragraph at lines 1759--1759
 []  \T1/zi4/m/n/10 Experimenter name: Tsukamoto S, Ishikawa T, Iida S, Ishigur
o M et al.??Clinical significance of osteoprotegerin expression in human colore
ctal cancer.??Clin Cancer Res2011 Apr 15[] 

Overfull \hbox (26.41006pt too wide) in paragraph at lines 1762--1762
 []  \T1/zi4/m/n/10 Title: Clinical significance of osteoprotegerin expression 
in human colorectal cancer.[] 
[37] [38]
Overfull \hbox (721.3385pt too wide) in paragraph at lines 1861--1861
 []  \T1/zi4/m/n/10 Experimenter name: Kogo R, Shimamura T, Mimori K, Kawahara 
K et al.??Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modi
fication and is associated with poor prognosis in colorectal cancers.??Cancer R
es??2011 Oct 15[] 

Overfull \hbox (308.04947pt too wide) in paragraph at lines 1864--1864
 []  \T1/zi4/m/n/10 Title: Long noncoding RNA HOTAIR regulates polycomb-depende
nt chromatin modification and is associated with poor prognosis in colorectal c
ancers.[] 
[39] [40] [41]
Overfull \hbox (859.66843pt too wide) in paragraph at lines 1988--1988
 []  \T1/zi4/m/n/10 Experimenter name: Sveen A,????esen TH,??Rognum TO,??Lothe 
RA,??Skotheim RI. Transcriptome instability in colorectal cancer identified by 
exon microarray analyses: Associations with splicing factor expression levels a
nd patient survival. Genome Med 2011 May 27[] 

Overfull \hbox (414.70932pt too wide) in paragraph at lines 1991--1991
 []  \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
 levels and patient survival.[] 
[42] [43] [44]
Overfull \hbox (822.99835pt too wide) in paragraph at lines 2111--2111
 []  \T1/zi4/m/n/10 Experimenter name: Sveen A, Agesen TH, Nesbakken A, Rognum 
TO et al.??Transcriptome instability in colorectal cancer identified by exon mi
croarray analyses: Associations with splicing factor expression levels and pati
ent survival.Genome Med??2011 May 27[] 

Overfull \hbox (414.70932pt too wide) in paragraph at lines 2114--2114
 []  \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
 levels and patient survival.[] 
[45]
Underfull \vbox (badness 10000) has occurred while \output is active [46]
Overfull \hbox (709.66843pt too wide) in paragraph at lines 2234--2234
 []  \T1/zi4/m/n/10 Experimenter name: Bandr??E,??Malumbres R,??Cubedo E,??Sola
 J,??Garc??Foncillas J,??Labarga A. A gene signature of 8 genes could identify 
the risk of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10
 B colon cancer patients. Oncol Rep 2007 May[] 

Overfull \hbox (54.75021pt too wide) in paragraph at lines 2235--2235
 []  \T1/zi4/m/n/10 Laboratory: Bandr??E,??Malumbres R,??Cubedo E,??Sola J,??Ga
rc??Foncillas J,??Labarga A 2005[] 

Overfull \hbox (193.03925pt too wide) in paragraph at lines 2237--2237
 []  \T1/zi4/m/n/10 Title: A gene signature of 8 genes could identify the risk 
of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10 B colon 
cancer patients.[] 
[47] [48] [49]
Overfull \hbox (1029.66843pt too wide) in paragraph at lines 2376--2376
 []  \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
 

Overfull \hbox (259.72977pt too wide) in paragraph at lines 2379--2379
 []  \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[] 
[50] [51]
Overfull \hbox (1029.66843pt too wide) in paragraph at lines 2470--2470
 []  \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
 

Overfull \hbox (259.72977pt too wide) in paragraph at lines 2473--2473
 []  \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[] 
[52] [53]
Overfull \hbox (411.35895pt too wide) in paragraph at lines 2564--2564
 []  \T1/zi4/m/n/10 Experimenter name: Birnbaum DJ, Laibe S, Ferrari A, Lagarde
 A et al.??Expression Profiles in Stage II Colon Cancer According to APC Gene S
tatus.??Transl Oncol??2012 Apr[] 
[54] [55] [56]
Overfull \hbox (78.08014pt too wide) in paragraph at lines 2702--2702
 []  \T1/zi4/m/n/10 Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????
Blanco A,??Garrido F,??Ruiz-Cabello F[] 

Overfull \hbox (68.08014pt too wide) in paragraph at lines 2703--2703
 []  \T1/zi4/m/n/10 Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco 
A,??Garrido F,??Ruiz-Cabello F 2011[] 

Overfull \hbox (228.04947pt too wide) in paragraph at lines 2705--2705
 []  \T1/zi4/m/n/10 Title: Genome-wide profiling characterizes CRCs with geneti
c instability and specific routes to HLA class I loss and immunoescape[] 
[57]
Overfull \hbox (483.0188pt too wide) in paragraph at lines 2788--2788
 []  \T1/zi4/m/n/10 Experimenter name: Tsuji S, Midorikawa Y, Takahashi T, Yagi
 K et al.??Potential responders to FOLFOX therapy for colorectal cancer by Rand
om Forests analysis.??Br J Cancer??2012 Jan 3[] 

Overfull \hbox (66.39984pt too wide) in paragraph at lines 2791--2791
 []  \T1/zi4/m/n/10 Title: Potential responders to FOLFOX therapy for colorecta
l cancer by Random Forests analysis.[] 
[58] [59]
Underfull \vbox (badness 10000) has occurred while \output is active [60]
Overfull \hbox (568.00858pt too wide) in paragraph at lines 2926--2926
 []  \T1/zi4/m/n/10 Experimenter name: Bianchini M, Levy E, Zucchini C, Pinski 
V et al.??Comparative study of gene expression by cDNA microarray in human colo
rectal cancer tissues and normal mucosa.??Int J Oncol??2006 Jul[] 

Overfull \hbox (164.71954pt too wide) in paragraph at lines 2929--2929
 []  \T1/zi4/m/n/10 Title: Comparative study of gene expression by cDNA microar
ray in human colorectal cancer tissues and normal mucosa.[] 
[61] [62] [63]
Overfull \hbox (661.3385pt too wide) in paragraph at lines 3052--3052
 []  \T1/zi4/m/n/10 Experimenter name: de Sousa E Melo F, Colak S, Buikhuisen J
, Koster J et al.??Methylation of cancer-stem-cell-associated Wnt target genes 
predicts poor prognosis in colorectal cancer patients.??Cell Stem Cell??2011 No
v 4[] 

Overfull \hbox (73.0597pt too wide) in paragraph at lines 3055--3055
 []  \T1/zi4/m/n/10 Title: Mutations in the Ras-Raf Axis underlie the prognosti
c value of CD133 in colorectal cancer.[] 
[64] [65]
Overfull \hbox (604.68887pt too wide) in paragraph at lines 3162--3162
 []  \T1/zi4/m/n/10 Experimenter name: Marisa L, de Reyni??A, Duval A, Selves J
 et al.??Gene expression classification of colon cancer into molecular subtypes
: characterization, validation, and prognostic value.??PLoS Med??2013[] 

Overfull \hbox (238.0597pt too wide) in paragraph at lines 3165--3165
 []  \T1/zi4/m/n/10 Title: Gene expression classification of colon cancer into 
molecular subtypes: characterization, validation, and prognostic value.[] 
[66] [67]
Underfull \vbox (badness 10000) has occurred while \output is active [68]
[69]
Overfull \hbox (369.70932pt too wide) in paragraph at lines 3316--3316
 []  \T1/zi4/m/n/10 Experimenter name: Graudens E, Boulanger V, Mollard C, Mari
age-Samson R et al.??Deciphering cellular states of innate tumor drug responses
.??Genome Biol??2006[] 
[70]
Underfull \vbox (badness 10000) has occurred while \output is active [71]
Overfull \hbox (466.35895pt too wide) in paragraph at lines 3462--3462
 []  \T1/zi4/m/n/10 Experimenter name: Laiho P, Kokko A, Vanharanta S, Salovaar
a R et al.??Serrated carcinomas form a subclass of colorectal cancer with disti
nct molecular basis.??Oncogene2007 Jan 11[] 
[72]
Overfull \hbox (61.39984pt too wide) in paragraph at lines 3465--3465
 []  \T1/zi4/m/n/10 Title: Serrated carcinomas form a subclass of colorectal ca
ncer with distinct molecular basis.[] 
[73]
Underfull \vbox (badness 10000) has occurred while \output is active [74]
Overfull \hbox (409.6991pt too wide) in paragraph at lines 3588--3588
 []  \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Sakamoto E, Yamam
oto Y et al.??Gene expression signature for recurrence in stage III colorectal 
cancers.??Cancer??2009 Jan 15[] 
[75] [76]
Overfull \hbox (303.03925pt too wide) in paragraph at lines 3694--3694
 []  \T1/zi4/m/n/10 Experimenter name: Profiling project of a panel of tubular 
adenoma and serrated adenoma patient material collected in the Academic Medical
 Center[] 

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 []  \T1/zi4/m/n/10 Laboratory: Medema JP,??de Sousa E Melo F,??Vermeulen L,??J
ansen M,??Dekker E,??Van Noesel C,??Fessler E 2013[] 
[77] [78]
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[92]
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Underfull \vbox (badness 10000) has occurred while \output is active [2]
Overfull \hbox (906.32828pt too wide) in paragraph at lines 96--96
 []  \T1/zi4/m/n/10 Experimenter name: Auman JT, Church R, Lee SY, Watson MA, F
leshman JW, Mcleod HL.??Celecoxib pre-treatment in human colorectal adenocarcin
oma patients is associated with gene expression alterations suggestive of dimin
ished cellular proliferation.??Eur J Cancer??2008 Aug[] 

Overfull \hbox (431.3794pt too wide) in paragraph at lines 99--99
 []  \T1/zi4/m/n/10 Title: Celecoxib pre-treatment in human colorectal adenocar
cinoma patients is associated with gene expression alterations suggestive of di
minished cellular proliferation.[] 
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [3] [4]
[5]
Overfull \hbox (523.0188pt too wide) in paragraph at lines 226--226
 []  \T1/zi4/m/n/10 Experimenter name: Lips EH, van Eijk R, de Graaf EJ, Oostin
g J et al.??Integrating chromosomal aberrations and gene expression profiles to
 dissect rectal tumorigenesis.BMC Cancer??2008 Oct 29[] 

Overfull \hbox (113.06992pt too wide) in paragraph at lines 229--229
 []  \T1/zi4/m/n/10 Title: Integrating chromosomal aberrations and gene express
ion profiles to dissect rectal tumorigenesis.[] 
[6] [7]
Overfull \hbox (613.00858pt too wide) in paragraph at lines 341--341
 []  \T1/zi4/m/n/10 Experimenter name: Staub E, Groene J, Heinze M, Mennerich D
 et al.??An expression module of WIPF1-coexpressed genes identifies patients wi
th favorable prognosis in three tumor types.??J Mol Med (Berl)??2009 Jun[] 

Overfull \hbox (191.38962pt too wide) in paragraph at lines 344--344
 []  \T1/zi4/m/n/10 Title: An expression module of WIPF1-coexpressed genes iden
tifies patients with favorable prognosis in three tumor types.[] 
[8] [9]
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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[11]
Overfull \hbox (694.67865pt too wide) in paragraph at lines 505--505
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman 
M et al.??DNA copy-number alterations underlie gene expression differences betw
een microsatellite stable and unstable colorectal cancers.??Clin Cancer Res??20
08 Dec 15[] 

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 []  \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
 differences between microsatellite stable and unstable colorectal cancers.[] 

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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[13]
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 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman 
M et al. DNA copy-number alterations underlie gene expression differences betwe
en microsatellite stable and unstable colorectal cancers. Clin Cancer Res 2008 
Dec 15[] 

Overfull \hbox (258.0597pt too wide) in paragraph at lines 594--594
 []  \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
 differences between microsatellite stable and unstable colorectal cancers.[] 
[14] [15]
Overfull \hbox (686.3385pt too wide) in paragraph at lines 677--677
 []  \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Yamamoto Y, Matsu
da K et al.??Gene expression signature and response to the use of leucovorin, f
luorouracil and oxaliplatin in colorectal cancer patients.??Clin Transl Oncol??
2011 Jun[] 

Overfull \hbox (238.04947pt too wide) in paragraph at lines 680--680
 []  \T1/zi4/m/n/10 Title: Gene expression signature and response to the use of
 leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.[] 
[16]
Overfull \hbox (679.66843pt too wide) in paragraph at lines 759--759
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Gibbs P, Christie M, Prakas
h S et al.??Metastasis-Associated Gene Expression Changes Predict Poor Outcomes
 in Patients with Dukes Stage B and C Colorectal Cancer.??Clin Cancer Res??2009
 Dec 15[] 

Overfull \hbox (233.04947pt too wide) in paragraph at lines 762--762
 []  \T1/zi4/m/n/10 Title: Metastasis-Associated Gene Expression Changes Predic
t Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.[] 
[17] [18]
Underfull \vbox (badness 10000) has occurred while \output is active [19]
Overfull \hbox (503.02902pt too wide) in paragraph at lines 897--897
 []  \T1/zi4/m/n/10 Experimenter name: Reid JF, Gariboldi M, Sokolova V, Capobi
anco P et al.??Integrative approach for prioritizing cancer genes in sporadic c
olon cancer.??Genes Chromosomes Cancer??2009 Nov[] 

Overfull \hbox (9.73999pt too wide) in paragraph at lines 900--900
 []  \T1/zi4/m/n/10 Title: Integrative approach for prioritizing cancer genes i
n sporadic colon cancer.[] 
[20] [21]
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 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1046--1046
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[23] [24]
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[26]
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 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1210--1210
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[27]
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[29]
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 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1370--1370
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[30] [31] [32]
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 []  \T1/zi4/m/n/10 Experimenter name: Matsuyama T, Ishikawa T, Mogushi K, Yosh
ida T et al.??MUC12 mRNA expression is an independent marker of prognosis in st
age II and stage III colorectal cancer.??Int J Cancer??2010 Nov 15[] 

Overfull \hbox (138.04947pt too wide) in paragraph at lines 1526--1526
 []  \T1/zi4/m/n/10 Title: MUC12 mRNA expression is an independent marker of pr
ognosis in stage II and stage III colorectal cancer.[] 
[33] [34]
Overfull \hbox (101.41006pt too wide) in paragraph at lines 1629--1629
 []  \T1/zi4/m/n/10 Experimenter name: EXpression Project for Oncology, Interna
tional Genomics Consortium, www.intgen.org[] 
[35] [36]
Overfull \hbox (8.67705pt too wide) in paragraph at lines 1746--1747
[]\T1/ptm/m/n/10 This study aimed to iden-tify a novel biomarker or a tar-get o
f treat-ment for col-orec-tal can-cer (CRC).The
[37]
Overfull \hbox (463.02902pt too wide) in paragraph at lines 1759--1759
 []  \T1/zi4/m/n/10 Experimenter name: Tsukamoto S, Ishikawa T, Iida S, Ishigur
o M et al.??Clinical significance of osteoprotegerin expression in human colore
ctal cancer.??Clin Cancer Res2011 Apr 15[] 

Overfull \hbox (26.41006pt too wide) in paragraph at lines 1762--1762
 []  \T1/zi4/m/n/10 Title: Clinical significance of osteoprotegerin expression 
in human colorectal cancer.[] 
[38] [39]
Overfull \hbox (721.3385pt too wide) in paragraph at lines 1861--1861
 []  \T1/zi4/m/n/10 Experimenter name: Kogo R, Shimamura T, Mimori K, Kawahara 
K et al.??Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modi
fication and is associated with poor prognosis in colorectal cancers.??Cancer R
es??2011 Oct 15[] 

Overfull \hbox (308.04947pt too wide) in paragraph at lines 1864--1864
 []  \T1/zi4/m/n/10 Title: Long noncoding RNA HOTAIR regulates polycomb-depende
nt chromatin modification and is associated with poor prognosis in colorectal c
ancers.[] 

Underfull \vbox (badness 1881) has occurred while \output is active [40]
[41] [42]
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 []  \T1/zi4/m/n/10 Experimenter name: Sveen A,????esen TH,??Rognum TO,??Lothe 
RA,??Skotheim RI. Transcriptome instability in colorectal cancer identified by 
exon microarray analyses: Associations with splicing factor expression levels a
nd patient survival. Genome Med 2011 May 27[] 

Overfull \hbox (414.70932pt too wide) in paragraph at lines 1991--1991
 []  \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
 levels and patient survival.[] 
[43] [44]
Overfull \hbox (822.99835pt too wide) in paragraph at lines 2111--2111
 []  \T1/zi4/m/n/10 Experimenter name: Sveen A, Agesen TH, Nesbakken A, Rognum 
TO et al.??Transcriptome instability in colorectal cancer identified by exon mi
croarray analyses: Associations with splicing factor expression levels and pati
ent survival.Genome Med??2011 May 27[] 

Overfull \hbox (414.70932pt too wide) in paragraph at lines 2114--2114
 []  \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
 levels and patient survival.[] 
[45] [46] [47]
Overfull \hbox (709.66843pt too wide) in paragraph at lines 2234--2234
 []  \T1/zi4/m/n/10 Experimenter name: Bandr??E,??Malumbres R,??Cubedo E,??Sola
 J,??Garc??Foncillas J,??Labarga A. A gene signature of 8 genes could identify 
the risk of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10
 B colon cancer patients. Oncol Rep 2007 May[] 

Overfull \hbox (54.75021pt too wide) in paragraph at lines 2235--2235
 []  \T1/zi4/m/n/10 Laboratory: Bandr??E,??Malumbres R,??Cubedo E,??Sola J,??Ga
rc??Foncillas J,??Labarga A 2005[] 

Overfull \hbox (193.03925pt too wide) in paragraph at lines 2237--2237
 []  \T1/zi4/m/n/10 Title: A gene signature of 8 genes could identify the risk 
of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10 B colon 
cancer patients.[] 
[48]
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[50]
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 []  \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
 

Overfull \hbox (259.72977pt too wide) in paragraph at lines 2379--2379
 []  \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[] 
[51] [52]
Overfull \hbox (1029.66843pt too wide) in paragraph at lines 2470--2470
 []  \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
 

Overfull \hbox (259.72977pt too wide) in paragraph at lines 2473--2473
 []  \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[] 
[53]
Overfull \hbox (411.35895pt too wide) in paragraph at lines 2564--2564
 []  \T1/zi4/m/n/10 Experimenter name: Birnbaum DJ, Laibe S, Ferrari A, Lagarde
 A et al.??Expression Profiles in Stage II Colon Cancer According to APC Gene S
tatus.??Transl Oncol??2012 Apr[] 
[54] [55]
Underfull \vbox (badness 10000) has occurred while \output is active [56]
Overfull \hbox (78.08014pt too wide) in paragraph at lines 2702--2702
 []  \T1/zi4/m/n/10 Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????
Blanco A,??Garrido F,??Ruiz-Cabello F[] 

Overfull \hbox (68.08014pt too wide) in paragraph at lines 2703--2703
 []  \T1/zi4/m/n/10 Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco 
A,??Garrido F,??Ruiz-Cabello F 2011[] 

Overfull \hbox (228.04947pt too wide) in paragraph at lines 2705--2705
 []  \T1/zi4/m/n/10 Title: Genome-wide profiling characterizes CRCs with geneti
c instability and specific routes to HLA class I loss and immunoescape[] 
[57] [58]
Overfull \hbox (483.0188pt too wide) in paragraph at lines 2788--2788
 []  \T1/zi4/m/n/10 Experimenter name: Tsuji S, Midorikawa Y, Takahashi T, Yagi
 K et al.??Potential responders to FOLFOX therapy for colorectal cancer by Rand
om Forests analysis.??Br J Cancer??2012 Jan 3[] 

Overfull \hbox (66.39984pt too wide) in paragraph at lines 2791--2791
 []  \T1/zi4/m/n/10 Title: Potential responders to FOLFOX therapy for colorecta
l cancer by Random Forests analysis.[] 
[59] [60] [61]
Overfull \hbox (568.00858pt too wide) in paragraph at lines 2926--2926
 []  \T1/zi4/m/n/10 Experimenter name: Bianchini M, Levy E, Zucchini C, Pinski 
V et al.??Comparative study of gene expression by cDNA microarray in human colo
rectal cancer tissues and normal mucosa.??Int J Oncol??2006 Jul[] 

Overfull \hbox (164.71954pt too wide) in paragraph at lines 2929--2929
 []  \T1/zi4/m/n/10 Title: Comparative study of gene expression by cDNA microar
ray in human colorectal cancer tissues and normal mucosa.[] 
[62]
Underfull \vbox (badness 10000) has occurred while \output is active [63]
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 []  \T1/zi4/m/n/10 Experimenter name: de Sousa E Melo F, Colak S, Buikhuisen J
, Koster J et al.??Methylation of cancer-stem-cell-associated Wnt target genes 
predicts poor prognosis in colorectal cancer patients.??Cell Stem Cell??2011 No
v 4[] 

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 []  \T1/zi4/m/n/10 Title: Mutations in the Ras-Raf Axis underlie the prognosti
c value of CD133 in colorectal cancer.[] 
[64] [65] [66]
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 []  \T1/zi4/m/n/10 Experimenter name: Marisa L, de Reyni??A, Duval A, Selves J
 et al.??Gene expression classification of colon cancer into molecular subtypes
: characterization, validation, and prognostic value.??PLoS Med??2013[] 

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 []  \T1/zi4/m/n/10 Title: Gene expression classification of colon cancer into 
molecular subtypes: characterization, validation, and prognostic value.[] 
[67] [68] [69]
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 []  \T1/zi4/m/n/10 Experimenter name: Graudens E, Boulanger V, Mollard C, Mari
age-Samson R et al.??Deciphering cellular states of innate tumor drug responses
.??Genome Biol??2006[] 
[70] [71] [72]
Overfull \hbox (466.35895pt too wide) in paragraph at lines 3462--3462
 []  \T1/zi4/m/n/10 Experimenter name: Laiho P, Kokko A, Vanharanta S, Salovaar
a R et al.??Serrated carcinomas form a subclass of colorectal cancer with disti
nct molecular basis.??Oncogene2007 Jan 11[] 

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 []  \T1/zi4/m/n/10 Title: Serrated carcinomas form a subclass of colorectal ca
ncer with distinct molecular basis.[] 
[73] [74] [75]
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 []  \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Sakamoto E, Yamam
oto Y et al.??Gene expression signature for recurrence in stage III colorectal 
cancers.??Cancer??2009 Jan 15[] 
[76]
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 []  \T1/zi4/m/n/10 Experimenter name: Profiling project of a panel of tubular 
adenoma and serrated adenoma patient material collected in the Academic Medical
 Center[] 

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 []  \T1/zi4/m/n/10 Laboratory: Medema JP,??de Sousa E Melo F,??Vermeulen L,??J
ansen M,??Dekker E,??Van Noesel C,??Fessler E 2013[] 
[77] [78]
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 []  \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

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 []  \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[79] [80]
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 []  \T1/zi4/m/n/10 Experimenter name: Auman JT, Church R, Lee SY, Watson MA, F
leshman JW, Mcleod HL.??Celecoxib pre-treatment in human colorectal adenocarcin
oma patients is associated with gene expression alterations suggestive of dimin
ished cellular proliferation.??Eur J Cancer??2008 Aug[] 

Overfull \hbox (431.3794pt too wide) in paragraph at lines 99--99
 []  \T1/zi4/m/n/10 Title: Celecoxib pre-treatment in human colorectal adenocar
cinoma patients is associated with gene expression alterations suggestive of di
minished cellular proliferation.[] 
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [3] [4]
[5]
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 []  \T1/zi4/m/n/10 Experimenter name: Lips EH, van Eijk R, de Graaf EJ, Oostin
g J et al.??Integrating chromosomal aberrations and gene expression profiles to
 dissect rectal tumorigenesis.BMC Cancer??2008 Oct 29[] 

Overfull \hbox (113.06992pt too wide) in paragraph at lines 229--229
 []  \T1/zi4/m/n/10 Title: Integrating chromosomal aberrations and gene express
ion profiles to dissect rectal tumorigenesis.[] 
[6] [7]
Overfull \hbox (613.00858pt too wide) in paragraph at lines 341--341
 []  \T1/zi4/m/n/10 Experimenter name: Staub E, Groene J, Heinze M, Mennerich D
 et al.??An expression module of WIPF1-coexpressed genes identifies patients wi
th favorable prognosis in three tumor types.??J Mol Med (Berl)??2009 Jun[] 

Overfull \hbox (191.38962pt too wide) in paragraph at lines 344--344
 []  \T1/zi4/m/n/10 Title: An expression module of WIPF1-coexpressed genes iden
tifies patients with favorable prognosis in three tumor types.[] 
[8] [9]
Underfull \vbox (badness 10000) has occurred while \output is active [10]
Overfull \hbox (5.87547pt too wide) in paragraph at lines 492--493
\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[11]
Overfull \hbox (694.67865pt too wide) in paragraph at lines 505--505
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman 
M et al.??DNA copy-number alterations underlie gene expression differences betw
een microsatellite stable and unstable colorectal cancers.??Clin Cancer Res??20
08 Dec 15[] 

Overfull \hbox (258.0597pt too wide) in paragraph at lines 508--508
 []  \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
 differences between microsatellite stable and unstable colorectal cancers.[] 

Underfull \vbox (badness 1881) has occurred while \output is active [12]
Overfull \hbox (5.87547pt too wide) in paragraph at lines 578--579
\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[13]
Overfull \hbox (674.66843pt too wide) in paragraph at lines 591--591
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman 
M et al. DNA copy-number alterations underlie gene expression differences betwe
en microsatellite stable and unstable colorectal cancers. Clin Cancer Res 2008 
Dec 15[] 

Overfull \hbox (258.0597pt too wide) in paragraph at lines 594--594
 []  \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
 differences between microsatellite stable and unstable colorectal cancers.[] 
[14] [15]
Overfull \hbox (686.3385pt too wide) in paragraph at lines 677--677
 []  \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Yamamoto Y, Matsu
da K et al.??Gene expression signature and response to the use of leucovorin, f
luorouracil and oxaliplatin in colorectal cancer patients.??Clin Transl Oncol??
2011 Jun[] 

Overfull \hbox (238.04947pt too wide) in paragraph at lines 680--680
 []  \T1/zi4/m/n/10 Title: Gene expression signature and response to the use of
 leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.[] 
[16]
Overfull \hbox (679.66843pt too wide) in paragraph at lines 759--759
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Gibbs P, Christie M, Prakas
h S et al.??Metastasis-Associated Gene Expression Changes Predict Poor Outcomes
 in Patients with Dukes Stage B and C Colorectal Cancer.??Clin Cancer Res??2009
 Dec 15[] 

Overfull \hbox (233.04947pt too wide) in paragraph at lines 762--762
 []  \T1/zi4/m/n/10 Title: Metastasis-Associated Gene Expression Changes Predic
t Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.[] 
[17] [18]
Underfull \vbox (badness 10000) has occurred while \output is active [19]
Overfull \hbox (503.02902pt too wide) in paragraph at lines 897--897
 []  \T1/zi4/m/n/10 Experimenter name: Reid JF, Gariboldi M, Sokolova V, Capobi
anco P et al.??Integrative approach for prioritizing cancer genes in sporadic c
olon cancer.??Genes Chromosomes Cancer??2009 Nov[] 

Overfull \hbox (9.73999pt too wide) in paragraph at lines 900--900
 []  \T1/zi4/m/n/10 Title: Integrative approach for prioritizing cancer genes i
n sporadic colon cancer.[] 
[20] [21]
Underfull \vbox (badness 10000) has occurred while \output is active [22]
Overfull \hbox (623.0188pt too wide) in paragraph at lines 1043--1043
 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1046--1046
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[23] [24]
Underfull \vbox (badness 10000) has occurred while \output is active [25]
[26]
Overfull \hbox (623.0188pt too wide) in paragraph at lines 1207--1207
 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1210--1210
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[27]
Underfull \vbox (badness 10000) has occurred while \output is active [28]
[29]
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 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1370--1370
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[30] [31] [32]
Overfull \hbox (579.66843pt too wide) in paragraph at lines 1523--1523
 []  \T1/zi4/m/n/10 Experimenter name: Matsuyama T, Ishikawa T, Mogushi K, Yosh
ida T et al.??MUC12 mRNA expression is an independent marker of prognosis in st
age II and stage III colorectal cancer.??Int J Cancer??2010 Nov 15[] 

Overfull \hbox (138.04947pt too wide) in paragraph at lines 1526--1526
 []  \T1/zi4/m/n/10 Title: MUC12 mRNA expression is an independent marker of pr
ognosis in stage II and stage III colorectal cancer.[] 
[33] [34]
Overfull \hbox (101.41006pt too wide) in paragraph at lines 1629--1629
 []  \T1/zi4/m/n/10 Experimenter name: EXpression Project for Oncology, Interna
tional Genomics Consortium, www.intgen.org[] 
[35] [36]
Overfull \hbox (8.67705pt too wide) in paragraph at lines 1746--1747
[]\T1/ptm/m/n/10 This study aimed to iden-tify a novel biomarker or a tar-get o
f treat-ment for col-orec-tal can-cer (CRC).The
[37]
Overfull \hbox (463.02902pt too wide) in paragraph at lines 1759--1759
 []  \T1/zi4/m/n/10 Experimenter name: Tsukamoto S, Ishikawa T, Iida S, Ishigur
o M et al.??Clinical significance of osteoprotegerin expression in human colore
ctal cancer.??Clin Cancer Res2011 Apr 15[] 

Overfull \hbox (26.41006pt too wide) in paragraph at lines 1762--1762
 []  \T1/zi4/m/n/10 Title: Clinical significance of osteoprotegerin expression 
in human colorectal cancer.[] 
[38] [39]
Overfull \hbox (721.3385pt too wide) in paragraph at lines 1861--1861
 []  \T1/zi4/m/n/10 Experimenter name: Kogo R, Shimamura T, Mimori K, Kawahara 
K et al.??Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modi
fication and is associated with poor prognosis in colorectal cancers.??Cancer R
es??2011 Oct 15[] 

Overfull \hbox (308.04947pt too wide) in paragraph at lines 1864--1864
 []  \T1/zi4/m/n/10 Title: Long noncoding RNA HOTAIR regulates polycomb-depende
nt chromatin modification and is associated with poor prognosis in colorectal c
ancers.[] 

Underfull \vbox (badness 1881) has occurred while \output is active [40]
[41] [42]
Overfull \hbox (859.66843pt too wide) in paragraph at lines 1988--1988
 []  \T1/zi4/m/n/10 Experimenter name: Sveen A,????esen TH,??Rognum TO,??Lothe 
RA,??Skotheim RI. Transcriptome instability in colorectal cancer identified by 
exon microarray analyses: Associations with splicing factor expression levels a
nd patient survival. Genome Med 2011 May 27[] 

Overfull \hbox (414.70932pt too wide) in paragraph at lines 1991--1991
 []  \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
 levels and patient survival.[] 
[43] [44]
Overfull \hbox (822.99835pt too wide) in paragraph at lines 2111--2111
 []  \T1/zi4/m/n/10 Experimenter name: Sveen A, Agesen TH, Nesbakken A, Rognum 
TO et al.??Transcriptome instability in colorectal cancer identified by exon mi
croarray analyses: Associations with splicing factor expression levels and pati
ent survival.Genome Med??2011 May 27[] 

Overfull \hbox (414.70932pt too wide) in paragraph at lines 2114--2114
 []  \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
 levels and patient survival.[] 
[45] [46] [47]
Overfull \hbox (709.66843pt too wide) in paragraph at lines 2234--2234
 []  \T1/zi4/m/n/10 Experimenter name: Bandr??E,??Malumbres R,??Cubedo E,??Sola
 J,??Garc??Foncillas J,??Labarga A. A gene signature of 8 genes could identify 
the risk of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10
 B colon cancer patients. Oncol Rep 2007 May[] 

Overfull \hbox (54.75021pt too wide) in paragraph at lines 2235--2235
 []  \T1/zi4/m/n/10 Laboratory: Bandr??E,??Malumbres R,??Cubedo E,??Sola J,??Ga
rc??Foncillas J,??Labarga A 2005[] 

Overfull \hbox (193.03925pt too wide) in paragraph at lines 2237--2237
 []  \T1/zi4/m/n/10 Title: A gene signature of 8 genes could identify the risk 
of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10 B colon 
cancer patients.[] 
[48]
Underfull \vbox (badness 10000) has occurred while \output is active [49]
[50]
Overfull \hbox (1029.66843pt too wide) in paragraph at lines 2376--2376
 []  \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
 

Overfull \hbox (259.72977pt too wide) in paragraph at lines 2379--2379
 []  \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[] 
[51] [52]
Overfull \hbox (1029.66843pt too wide) in paragraph at lines 2470--2470
 []  \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
 

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 []  \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[] 
[53]
Overfull \hbox (411.35895pt too wide) in paragraph at lines 2564--2564
 []  \T1/zi4/m/n/10 Experimenter name: Birnbaum DJ, Laibe S, Ferrari A, Lagarde
 A et al.??Expression Profiles in Stage II Colon Cancer According to APC Gene S
tatus.??Transl Oncol??2012 Apr[] 
[54] [55]
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 []  \T1/zi4/m/n/10 Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????
Blanco A,??Garrido F,??Ruiz-Cabello F[] 

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 []  \T1/zi4/m/n/10 Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco 
A,??Garrido F,??Ruiz-Cabello F 2011[] 

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 []  \T1/zi4/m/n/10 Title: Genome-wide profiling characterizes CRCs with geneti
c instability and specific routes to HLA class I loss and immunoescape[] 
[57] [58]
Overfull \hbox (483.0188pt too wide) in paragraph at lines 2788--2788
 []  \T1/zi4/m/n/10 Experimenter name: Tsuji S, Midorikawa Y, Takahashi T, Yagi
 K et al.??Potential responders to FOLFOX therapy for colorectal cancer by Rand
om Forests analysis.??Br J Cancer??2012 Jan 3[] 

Overfull \hbox (66.39984pt too wide) in paragraph at lines 2791--2791
 []  \T1/zi4/m/n/10 Title: Potential responders to FOLFOX therapy for colorecta
l cancer by Random Forests analysis.[] 
[59] [60] [61]
Overfull \hbox (568.00858pt too wide) in paragraph at lines 2926--2926
 []  \T1/zi4/m/n/10 Experimenter name: Bianchini M, Levy E, Zucchini C, Pinski 
V et al.??Comparative study of gene expression by cDNA microarray in human colo
rectal cancer tissues and normal mucosa.??Int J Oncol??2006 Jul[] 

Overfull \hbox (164.71954pt too wide) in paragraph at lines 2929--2929
 []  \T1/zi4/m/n/10 Title: Comparative study of gene expression by cDNA microar
ray in human colorectal cancer tissues and normal mucosa.[] 
[62]
Underfull \vbox (badness 10000) has occurred while \output is active [63]
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 []  \T1/zi4/m/n/10 Experimenter name: de Sousa E Melo F, Colak S, Buikhuisen J
, Koster J et al.??Methylation of cancer-stem-cell-associated Wnt target genes 
predicts poor prognosis in colorectal cancer patients.??Cell Stem Cell??2011 No
v 4[] 

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 []  \T1/zi4/m/n/10 Title: Mutations in the Ras-Raf Axis underlie the prognosti
c value of CD133 in colorectal cancer.[] 
[64] [65] [66]
Overfull \hbox (604.68887pt too wide) in paragraph at lines 3162--3162
 []  \T1/zi4/m/n/10 Experimenter name: Marisa L, de Reyni??A, Duval A, Selves J
 et al.??Gene expression classification of colon cancer into molecular subtypes
: characterization, validation, and prognostic value.??PLoS Med??2013[] 

Overfull \hbox (238.0597pt too wide) in paragraph at lines 3165--3165
 []  \T1/zi4/m/n/10 Title: Gene expression classification of colon cancer into 
molecular subtypes: characterization, validation, and prognostic value.[] 
[67] [68] [69]
Overfull \hbox (369.70932pt too wide) in paragraph at lines 3316--3316
 []  \T1/zi4/m/n/10 Experimenter name: Graudens E, Boulanger V, Mollard C, Mari
age-Samson R et al.??Deciphering cellular states of innate tumor drug responses
.??Genome Biol??2006[] 
[70] [71] [72]
Overfull \hbox (466.35895pt too wide) in paragraph at lines 3462--3462
 []  \T1/zi4/m/n/10 Experimenter name: Laiho P, Kokko A, Vanharanta S, Salovaar
a R et al.??Serrated carcinomas form a subclass of colorectal cancer with disti
nct molecular basis.??Oncogene2007 Jan 11[] 

Overfull \hbox (61.39984pt too wide) in paragraph at lines 3465--3465
 []  \T1/zi4/m/n/10 Title: Serrated carcinomas form a subclass of colorectal ca
ncer with distinct molecular basis.[] 
[73] [74] [75]
Overfull \hbox (409.6991pt too wide) in paragraph at lines 3588--3588
 []  \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Sakamoto E, Yamam
oto Y et al.??Gene expression signature for recurrence in stage III colorectal 
cancers.??Cancer??2009 Jan 15[] 
[76]
Overfull \hbox (303.03925pt too wide) in paragraph at lines 3694--3694
 []  \T1/zi4/m/n/10 Experimenter name: Profiling project of a panel of tubular 
adenoma and serrated adenoma patient material collected in the Academic Medical
 Center[] 

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 []  \T1/zi4/m/n/10 Laboratory: Medema JP,??de Sousa E Melo F,??Vermeulen L,??J
ansen M,??Dekker E,??Van Noesel C,??Fessler E 2013[] 
[77] [78]
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 []  \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

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 []  \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[] 
[79] [80]
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[83]
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 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

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lon and rectal cancer.[] 
[84]
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[88]
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 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

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[89]
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[91]
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 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

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[92] [93]
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[2]
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 []  \T1/zi4/m/n/10 Experimenter name: Auman JT, Church R, Lee SY, Watson MA, F
leshman JW, Mcleod HL.??Celecoxib pre-treatment in human colorectal adenocarcin
oma patients is associated with gene expression alterations suggestive of dimin
ished cellular proliferation.??Eur J Cancer??2008 Aug[] 

Overfull \hbox (431.3794pt too wide) in paragraph at lines 99--99
 []  \T1/zi4/m/n/10 Title: Celecoxib pre-treatment in human colorectal adenocar
cinoma patients is associated with gene expression alterations suggestive of di
minished cellular proliferation.[] 
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [3] [4]
[5]
Overfull \hbox (523.0188pt too wide) in paragraph at lines 226--226
 []  \T1/zi4/m/n/10 Experimenter name: Lips EH, van Eijk R, de Graaf EJ, Oostin
g J et al.??Integrating chromosomal aberrations and gene expression profiles to
 dissect rectal tumorigenesis.BMC Cancer??2008 Oct 29[] 

Overfull \hbox (113.06992pt too wide) in paragraph at lines 229--229
 []  \T1/zi4/m/n/10 Title: Integrating chromosomal aberrations and gene express
ion profiles to dissect rectal tumorigenesis.[] 
[6] [7]
Overfull \hbox (613.00858pt too wide) in paragraph at lines 341--341
 []  \T1/zi4/m/n/10 Experimenter name: Staub E, Groene J, Heinze M, Mennerich D
 et al.??An expression module of WIPF1-coexpressed genes identifies patients wi
th favorable prognosis in three tumor types.??J Mol Med (Berl)??2009 Jun[] 

Overfull \hbox (191.38962pt too wide) in paragraph at lines 344--344
 []  \T1/zi4/m/n/10 Title: An expression module of WIPF1-coexpressed genes iden
tifies patients with favorable prognosis in three tumor types.[] 
[8] [9]
Underfull \vbox (badness 10000) has occurred while \output is active [10]
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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[11]
Overfull \hbox (694.67865pt too wide) in paragraph at lines 505--505
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman 
M et al.??DNA copy-number alterations underlie gene expression differences betw
een microsatellite stable and unstable colorectal cancers.??Clin Cancer Res??20
08 Dec 15[] 

Overfull \hbox (258.0597pt too wide) in paragraph at lines 508--508
 []  \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
 differences between microsatellite stable and unstable colorectal cancers.[] 

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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[13]
Overfull \hbox (674.66843pt too wide) in paragraph at lines 591--591
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman 
M et al. DNA copy-number alterations underlie gene expression differences betwe
en microsatellite stable and unstable colorectal cancers. Clin Cancer Res 2008 
Dec 15[] 

Overfull \hbox (258.0597pt too wide) in paragraph at lines 594--594
 []  \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
 differences between microsatellite stable and unstable colorectal cancers.[] 
[14] [15]
Overfull \hbox (686.3385pt too wide) in paragraph at lines 677--677
 []  \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Yamamoto Y, Matsu
da K et al.??Gene expression signature and response to the use of leucovorin, f
luorouracil and oxaliplatin in colorectal cancer patients.??Clin Transl Oncol??
2011 Jun[] 

Overfull \hbox (238.04947pt too wide) in paragraph at lines 680--680
 []  \T1/zi4/m/n/10 Title: Gene expression signature and response to the use of
 leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.[] 
[16]
Overfull \hbox (679.66843pt too wide) in paragraph at lines 759--759
 []  \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Gibbs P, Christie M, Prakas
h S et al.??Metastasis-Associated Gene Expression Changes Predict Poor Outcomes
 in Patients with Dukes Stage B and C Colorectal Cancer.??Clin Cancer Res??2009
 Dec 15[] 

Overfull \hbox (233.04947pt too wide) in paragraph at lines 762--762
 []  \T1/zi4/m/n/10 Title: Metastasis-Associated Gene Expression Changes Predic
t Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.[] 
[17] [18]
Underfull \vbox (badness 10000) has occurred while \output is active [19]
Overfull \hbox (503.02902pt too wide) in paragraph at lines 897--897
 []  \T1/zi4/m/n/10 Experimenter name: Reid JF, Gariboldi M, Sokolova V, Capobi
anco P et al.??Integrative approach for prioritizing cancer genes in sporadic c
olon cancer.??Genes Chromosomes Cancer??2009 Nov[] 

Overfull \hbox (9.73999pt too wide) in paragraph at lines 900--900
 []  \T1/zi4/m/n/10 Title: Integrative approach for prioritizing cancer genes i
n sporadic colon cancer.[] 
[20] [21]
Underfull \vbox (badness 10000) has occurred while \output is active [22]
Overfull \hbox (623.0188pt too wide) in paragraph at lines 1043--1043
 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1046--1046
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[23] [24]
Underfull \vbox (badness 10000) has occurred while \output is active [25]
[26]
Overfull \hbox (623.0188pt too wide) in paragraph at lines 1207--1207
 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1210--1210
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[27]
Underfull \vbox (badness 10000) has occurred while \output is active [28]
[29]
Overfull \hbox (623.0188pt too wide) in paragraph at lines 1367--1367
 []  \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
 al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[] 

Overfull \hbox (211.38962pt too wide) in paragraph at lines 1370--1370
 []  \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[] 
[30] [31] [32]
Overfull \hbox (579.66843pt too wide) in paragraph at lines 1523--1523
 []  \T1/zi4/m/n/10 Experimenter name: Matsuyama T, Ishikawa T, Mogushi K, Yosh
ida T et al.??MUC12 mRNA expression is an independent marker of prognosis in st
age II and stage III colorectal cancer.??Int J Cancer??2010 Nov 15[] 

Overfull \hbox (138.04947pt too wide) in paragraph at lines 1526--1526
 []  \T1/zi4/m/n/10 Title: MUC12 mRNA expression is an independent marker of pr
ognosis in stage II and stage III colorectal cancer.[] 
[33] [34]
Overfull \hbox (101.41006pt too wide) in paragraph at lines 1629--1629
 []  \T1/zi4/m/n/10 Experimenter name: EXpression Project for Oncology, Interna
tional Genomics Consortium, www.intgen.org[] 
[35] [36]
Overfull \hbox (8.67705pt too wide) in paragraph at lines 1746--1747
[]\T1/ptm/m/n/10 This study aimed to iden-tify a novel biomarker or a tar-get o
f treat-ment for col-orec-tal can-cer (CRC).The
[37]
Overfull \hbox (463.02902pt too wide) in paragraph at lines 1759--1759
 []  \T1/zi4/m/n/10 Experimenter name: Tsukamoto S, Ishikawa T, Iida S, Ishigur
o M et al.??Clinical significance of osteoprotegerin expression in human colore
ctal cancer.??Clin Cancer Res2011 Apr 15[] 

Overfull \hbox (26.41006pt too wide) in paragraph at lines 1762--1762
 []  \T1/zi4/m/n/10 Title: Clinical significance of osteoprotegerin expression 
in human colorectal cancer.[] 
[38] [39]
Overfull \hbox (721.3385pt too wide) in paragraph at lines 1861--1861
 []  \T1/zi4/m/n/10 Experimenter name: Kogo R, Shimamura T, Mimori K, Kawahara 
K et al.??Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modi
fication and is associated with poor prognosis in colorectal cancers.??Cancer R
es??2011 Oct 15[] 

Overfull \hbox (308.04947pt too wide) in paragraph at lines 1864--1864
 []  \T1/zi4/m/n/10 Title: Long noncoding RNA HOTAIR regulates polycomb-depende
nt chromatin modification and is associated with poor prognosis in colorectal c
ancers.[] 

Underfull \vbox (badness 1881) has occurred while \output is active [40]
[41] [42]
Overfull \hbox (859.66843pt too wide) in paragraph at lines 1988--1988
 []  \T1/zi4/m/n/10 Experimenter name: Sveen A,????esen TH,??Rognum TO,??Lothe 
RA,??Skotheim RI. Transcriptome instability in colorectal cancer identified by 
exon microarray analyses: Associations with splicing factor expression levels a
nd patient survival. Genome Med 2011 May 27[] 

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 []  \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
 levels and patient survival.[] 
[43] [44]
Overfull \hbox (822.99835pt too wide) in paragraph at lines 2111--2111
 []  \T1/zi4/m/n/10 Experimenter name: Sveen A, Agesen TH, Nesbakken A, Rognum 
TO et al.??Transcriptome instability in colorectal cancer identified by exon mi
croarray analyses: Associations with splicing factor expression levels and pati
ent survival.Genome Med??2011 May 27[] 

Overfull \hbox (414.70932pt too wide) in paragraph at lines 2114--2114
 []  \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
 levels and patient survival.[] 
[45] [46] [47]
Overfull \hbox (709.66843pt too wide) in paragraph at lines 2234--2234
 []  \T1/zi4/m/n/10 Experimenter name: Bandr??E,??Malumbres R,??Cubedo E,??Sola
 J,??Garc??Foncillas J,??Labarga A. A gene signature of 8 genes could identify 
the risk of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10
 B colon cancer patients. Oncol Rep 2007 May[] 

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 []  \T1/zi4/m/n/10 Laboratory: Bandr??E,??Malumbres R,??Cubedo E,??Sola J,??Ga
rc??Foncillas J,??Labarga A 2005[] 

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 []  \T1/zi4/m/n/10 Title: A gene signature of 8 genes could identify the risk 
of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10 B colon 
cancer patients.[] 
[48]
Underfull \vbox (badness 10000) has occurred while \output is active [49]
[50]
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 []  \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
 

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 []  \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[] 
[51] [52]
Overfull \hbox (1029.66843pt too wide) in paragraph at lines 2470--2470
 []  \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
 

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 []  \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[] 
[53]
Overfull \hbox (411.35895pt too wide) in paragraph at lines 2564--2564
 []  \T1/zi4/m/n/10 Experimenter name: Birnbaum DJ, Laibe S, Ferrari A, Lagarde
 A et al.??Expression Profiles in Stage II Colon Cancer According to APC Gene S
tatus.??Transl Oncol??2012 Apr[] 
[54] [55]
Underfull \vbox (badness 10000) has occurred while \output is active [56]
Overfull \hbox (78.08014pt too wide) in paragraph at lines 2702--2702
 []  \T1/zi4/m/n/10 Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????
Blanco A,??Garrido F,??Ruiz-Cabello F[] 

Overfull \hbox (68.08014pt too wide) in paragraph at lines 2703--2703
 []  \T1/zi4/m/n/10 Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco 
A,??Garrido F,??Ruiz-Cabello F 2011[] 

Overfull \hbox (228.04947pt too wide) in paragraph at lines 2705--2705
 []  \T1/zi4/m/n/10 Title: Genome-wide profiling characterizes CRCs with geneti
c instability and specific routes to HLA class I loss and immunoescape[] 
[57] [58]
Overfull \hbox (483.0188pt too wide) in paragraph at lines 2788--2788
 []  \T1/zi4/m/n/10 Experimenter name: Tsuji S, Midorikawa Y, Takahashi T, Yagi
 K et al.??Potential responders to FOLFOX therapy for colorectal cancer by Rand
om Forests analysis.??Br J Cancer??2012 Jan 3[] 

Overfull \hbox (66.39984pt too wide) in paragraph at lines 2791--2791
 []  \T1/zi4/m/n/10 Title: Potential responders to FOLFOX therapy for colorecta
l cancer by Random Forests analysis.[] 
[59] [60] [61]
Overfull \hbox (568.00858pt too wide) in paragraph at lines 2926--2926
 []  \T1/zi4/m/n/10 Experimenter name: Bianchini M, Levy E, Zucchini C, Pinski 
V et al.??Comparative study of gene expression by cDNA microarray in human colo
rectal cancer tissues and normal mucosa.??Int J Oncol??2006 Jul[] 

Overfull \hbox (164.71954pt too wide) in paragraph at lines 2929--2929
 []  \T1/zi4/m/n/10 Title: Comparative study of gene expression by cDNA microar
ray in human colorectal cancer tissues and normal mucosa.[] 
[62]
Underfull \vbox (badness 10000) has occurred while \output is active [63]
Overfull \hbox (661.3385pt too wide) in paragraph at lines 3052--3052
 []  \T1/zi4/m/n/10 Experimenter name: de Sousa E Melo F, Colak S, Buikhuisen J
, Koster J et al.??Methylation of cancer-stem-cell-associated Wnt target genes 
predicts poor prognosis in colorectal cancer patients.??Cell Stem Cell??2011 No
v 4[] 

Overfull \hbox (73.0597pt too wide) in paragraph at lines 3055--3055
 []  \T1/zi4/m/n/10 Title: Mutations in the Ras-Raf Axis underlie the prognosti
c value of CD133 in colorectal cancer.[] 
[64] [65] [66]
Overfull \hbox (604.68887pt too wide) in paragraph at lines 3162--3162
 []  \T1/zi4/m/n/10 Experimenter name: Marisa L, de Reyni??A, Duval A, Selves J
 et al.??Gene expression classification of colon cancer into molecular subtypes
: characterization, validation, and prognostic value.??PLoS Med??2013[] 

Overfull \hbox (238.0597pt too wide) in paragraph at lines 3165--3165
 []  \T1/zi4/m/n/10 Title: Gene expression classification of colon cancer into 
molecular subtypes: characterization, validation, and prognostic value.[] 
[67] [68] [69]
Overfull \hbox (369.70932pt too wide) in paragraph at lines 3316--3316
 []  \T1/zi4/m/n/10 Experimenter name: Graudens E, Boulanger V, Mollard C, Mari
age-Samson R et al.??Deciphering cellular states of innate tumor drug responses
.??Genome Biol??2006[] 
[70] [71] [72]
Overfull \hbox (466.35895pt too wide) in paragraph at lines 3462--3462
 []  \T1/zi4/m/n/10 Experimenter name: Laiho P, Kokko A, Vanharanta S, Salovaar
a R et al.??Serrated carcinomas form a subclass of colorectal cancer with disti
nct molecular basis.??Oncogene2007 Jan 11[] 

Overfull \hbox (61.39984pt too wide) in paragraph at lines 3465--3465
 []  \T1/zi4/m/n/10 Title: Serrated carcinomas form a subclass of colorectal ca
ncer with distinct molecular basis.[] 
[73] [74] [75]
Overfull \hbox (409.6991pt too wide) in paragraph at lines 3588--3588
 []  \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Sakamoto E, Yamam
oto Y et al.??Gene expression signature for recurrence in stage III colorectal 
cancers.??Cancer??2009 Jan 15[] 
[76]
Overfull \hbox (303.03925pt too wide) in paragraph at lines 3694--3694
 []  \T1/zi4/m/n/10 Experimenter name: Profiling project of a panel of tubular 
adenoma and serrated adenoma patient material collected in the Academic Medical
 Center[] 

Overfull \hbox (134.72977pt too wide) in paragraph at lines 3695--3695
 []  \T1/zi4/m/n/10 Laboratory: Medema JP,??de Sousa E Melo F,??Vermeulen L,??J
ansen M,??Dekker E,??Van Noesel C,??Fessler E 2013[] 
[77] [78]
Overfull \hbox (179.72977pt too wide) in paragraph at lines 3772--3772
 []  \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

Overfull \hbox (1.41006pt too wide) in paragraph at lines 3775--3775
 []  \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[] 
[79] [80]
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[83]
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 []  \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

Overfull \hbox (1.41006pt too wide) in paragraph at lines 4008--4008
 []  \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[] 
[84]
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[88]
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 []  \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

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 []  \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[] 
[89]
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[91]
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 []  \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
 of human colon and rectal cancer. Nature 2012, 487:330-337[] 

Overfull \hbox (1.41006pt too wide) in paragraph at lines 4426--4426
 []  \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[] 
[92] [93]
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Transcript written on Rd2.log.
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