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CHECK report for KEGGandMetacoreDzPathwaysGEO on malbec2

This page was generated on 2021-01-11 15:59:23 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE KEGGandMetacoreDzPathwaysGEO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 191/385HostnameOS / ArchINSTALLBUILDCHECK
KEGGandMetacoreDzPathwaysGEO 1.11.0
Gaurav Bhatti
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Branch: master
Last Commit: 2a5f8a4
Last Changed Date: 2020-10-27 10:09:09 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK 

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 1.11.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_1.11.0.tar.gz
StartedAt: 2021-01-11 12:15:54 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 12:16:53 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 59.7 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_1.11.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R Under development (unstable) (2021-01-05 r79797)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.11.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.



Installation output

KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGandMetacoreDzPathwaysGEO)

Tests output


Example timings

KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings

nameusersystemelapsed
GSE11450.3640.0120.377
GSE119062.8290.0282.857
GSE14924_CD40.2700.0040.274
GSE14924_CD80.2410.0080.248
GSE167590.3070.0040.310
GSE194200.2210.0040.224
GSE201640.0560.0120.069
GSE227800.2210.0040.226
GSE238780.7880.0200.809
GSE24739_G00.4210.0160.437
GSE24739_G10.4330.0080.442
GSE301530.5390.0040.543
GSE326760.7660.0040.770
GSE38666_epithelia0.3040.0280.332
GSE38666_stroma0.2020.0200.222
GSE41830.2770.0080.285
GSE420571.1350.0201.155
GSE73050.6890.0080.696
KEGGandMetacoreDzPathwaysGEO-package0.6770.0080.721