Back to Multiple platform build/check report for BioC 3.13 experimental data
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

CHECK report for FieldEffectCrc on malbec2

This page was generated on 2021-01-14 15:59:00 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE FieldEffectCrc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 120/385HostnameOS / ArchINSTALLBUILDCHECK
FieldEffectCrc 1.1.0
Christopher Dampier
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/FieldEffectCrc
Branch: master
Last Commit: 74e7533
Last Changed Date: 2020-10-27 10:32:06 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK 

Summary

Package: FieldEffectCrc
Version: 1.1.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:FieldEffectCrc.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings FieldEffectCrc_1.1.0.tar.gz
StartedAt: 2021-01-14 12:04:01 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 12:09:18 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 317.3 seconds
RetCode: 0
Status:  OK 
CheckDir: FieldEffectCrc.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:FieldEffectCrc.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings FieldEffectCrc_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/FieldEffectCrc.Rcheck’
* using R Under development (unstable) (2021-01-05 r79797)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FieldEffectCrc/DESCRIPTION’ ... OK
* this is package ‘FieldEffectCrc’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FieldEffectCrc’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
FieldEffectCrc 29.661  0.847  33.833
cohort_A       13.163  0.588  18.025
cohort_C        7.951  0.180   9.629
cohort_B        7.300  0.140   9.567
reorder_assays  6.641  0.344   7.692
make_txi        5.960  0.336   6.874
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/FieldEffectCrc.Rcheck/00check.log’
for details.



Installation output

FieldEffectCrc.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL FieldEffectCrc
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘FieldEffectCrc’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2021-01-14
** testing if installed package can be loaded from final location
snapshotDate(): 2021-01-14
** testing if installed package keeps a record of temporary installation path
* DONE (FieldEffectCrc)

Tests output

FieldEffectCrc.Rcheck/tests/runTests.Rout


R Under development (unstable) (2021-01-05 r79797) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("FieldEffectCrc")
snapshotDate(): 2021-01-14
snapshotDate(): 2021-01-14
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache
snapshotDate(): 2021-01-14
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache
snapshotDate(): 2021-01-14
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache


RUNIT TEST PROTOCOL -- Thu Jan 14 12:09:15 2021 
*********************************************** 
Number of test functions: 3 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
FieldEffectCrc RUnit Tests - 3 test functions, 0 errors, 0 failures
Number of test functions: 3 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 22.270   0.643  30.672 

Example timings

FieldEffectCrc.Rcheck/FieldEffectCrc-Ex.timings

nameusersystemelapsed
FieldEffectCrc29.661 0.84733.833
cohort_A13.163 0.58818.025
cohort_B7.3000.1409.567
cohort_C7.9510.1809.629
make_txi5.9600.3366.874
reorder_assays6.6410.3447.692