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This page was generated on 2021-10-15 15:06:25 -0400 (Fri, 15 Oct 2021).

BUILD results for TCGAbiolinks on tokay2

To the developers/maintainers of the TCGAbiolinks package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAbiolinks.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1899/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAbiolinks 2.20.1  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/TCGAbiolinks
git_branch: RELEASE_3_13
git_last_commit: d7830c91
git_last_commit_date: 2021-10-04 16:09:51 -0400 (Mon, 04 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: TCGAbiolinks
Version: 2.20.1
Command: chmod a+r TCGAbiolinks -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks
StartedAt: 2021-10-14 18:44:51 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 18:54:45 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 594.1 seconds
RetCode: 0
Status:   OK  
PackageFile: TCGAbiolinks_2.20.1.tar.gz
PackageFileSize: 56.79 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r TCGAbiolinks -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks
###
##############################################################################
##############################################################################


* checking for file 'TCGAbiolinks/DESCRIPTION' ... OK
* preparing 'TCGAbiolinks':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'TCGAbiolinks_2.20.1.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-ACC/harmonized/Clinical/Clinical_Supplement/4612e74a-f374-459a-a14f-8cecdb1c14f8/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-ACC/harmonized/Clinical/Clinical_Supplement/4612e74a-f374-459a-a14f-8cecdb1c14f8/nationwidechildrens.org_clinical_radiation_acc.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/22656b71-476a-4b5f-9f3b-82afb29a34bc/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/22656b71-476a-4b5f-9f3b-82afb29a34bc/nationwidechildrens.org_biospecimen_portion_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/41fd4c6c-2932-4c6b-914f-7abaea9dc8a0/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/41fd4c6c-2932-4c6b-914f-7abaea9dc8a0/nationwidechildrens.org_ssf_tumor_samples_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/43569ab9-5a32-45ef-a07e-e93f45416a16/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/43569ab9-5a32-45ef-a07e-e93f45416a16/nationwidechildrens.org_biospecimen_shipment_portion_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/5907be67-69f6-4339-8264-952a2462bea5/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/5907be67-69f6-4339-8264-952a2462bea5/nationwidechildrens.org_ssf_normal_controls_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/950ee56c-df20-4b39-867e-c73f17d0f4f6/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/950ee56c-df20-4b39-867e-c73f17d0f4f6/nationwidechildrens.org_biospecimen_aliquot_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/a24d7574-e419-47ce-9293-b9b29f854a10/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/a24d7574-e419-47ce-9293-b9b29f854a10/nationwidechildrens.org_biospecimen_protocol_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/c10090b8-fa42-4e32-86a0-9dedceb5b605/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/c10090b8-fa42-4e32-86a0-9dedceb5b605/nationwidechildrens.org_biospecimen_slide_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/c5039e7e-14d8-4e59-ba20-0d3fa38b86df/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/c5039e7e-14d8-4e59-ba20-0d3fa38b86df/nationwidechildrens.org_biospecimen_sample_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/d0c967b5-78ee-4bc4-9493-3cbe44af1bf5/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/d0c967b5-78ee-4bc4-9493-3cbe44af1bf5/nationwidechildrens.org_biospecimen_analyte_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/edbb5de2-d0b5-4a07-a0e1-19e952a5117d/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/edbb5de2-d0b5-4a07-a0e1-19e952a5117d/nationwidechildrens.org_biospecimen_diagnostic_slides_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/0a40467f-9495-4c5b-b56e-3347a3ee0572/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/0a40467f-9495-4c5b-b56e-3347a3ee0572/nationwidechildrens.org_clinical_radiation_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/1e6b79ff-9787-4cbe-b19d-ebabb6b43589/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/1e6b79ff-9787-4cbe-b19d-ebabb6b43589/nationwidechildrens.org_clinical_drug_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/22f38342-3f1a-47e5-9025-c19719fa21d0/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/22f38342-3f1a-47e5-9025-c19719fa21d0/nationwidechildrens.org_clinical_follow_up_v1.5_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/403b5cef-8173-47c7-b56a-cc94dcfbb2e3/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/403b5cef-8173-47c7-b56a-cc94dcfbb2e3/nationwidechildrens.org_clinical_follow_up_v2.1_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/62d4515f-a30b-4b1a-b2dd-c8bf9476e803/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/62d4515f-a30b-4b1a-b2dd-c8bf9476e803/nationwidechildrens.org_clinical_follow_up_v4.0_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/8162d394-8b64-4da2-9f5b-d164c54b9608/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/8162d394-8b64-4da2-9f5b-d164c54b9608/nationwidechildrens.org_clinical_patient_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/a88c168e-4bba-4bd2-9c0c-77934444cc1c/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/a88c168e-4bba-4bd2-9c0c-77934444cc1c/nationwidechildrens.org_clinical_nte_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/a9baecf0-5549-4396-8805-a6d1681d11cd/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/a9baecf0-5549-4396-8805-a6d1681d11cd/nationwidechildrens.org_clinical_follow_up_v4.0_nte_brca.txt'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/f434b393-9e32-4ca2-aa1a-3b0de36b5ffe/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/f434b393-9e32-4ca2-aa1a-3b0de36b5ffe/nationwidechildrens.org_clinical_omf_v4.0_brca.txt'