Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNOPQRSTUVWX[Y]Z

INSTALL report for yaqcaffy on tokay1

This page was generated on 2021-05-06 12:34:13 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the yaqcaffy package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1969/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
yaqcaffy 1.50.0  (landing page)
Laurent Gatto
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/yaqcaffy
Branch: RELEASE_3_12
Last Commit: b32e6b9
Last Changed Date: 2020-10-27 10:32:18 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: yaqcaffy
Version: 1.50.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/yaqcaffy_1.50.0.tar.gz && rm -rf yaqcaffy.buildbin-libdir && mkdir yaqcaffy.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=yaqcaffy.buildbin-libdir yaqcaffy_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL yaqcaffy_1.50.0.zip && rm yaqcaffy_1.50.0.tar.gz yaqcaffy_1.50.0.zip
StartedAt: 2021-05-05 18:07:15 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:08:26 -0400 (Wed, 05 May 2021)
EllapsedTime: 70.8 seconds
RetCode: 0
Status:   OK   

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/yaqcaffy_1.50.0.tar.gz && rm -rf yaqcaffy.buildbin-libdir && mkdir yaqcaffy.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=yaqcaffy.buildbin-libdir yaqcaffy_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL yaqcaffy_1.50.0.zip && rm yaqcaffy_1.50.0.tar.gz yaqcaffy_1.50.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 43123  100 43123    0     0  3214k      0 --:--:-- --:--:-- --:--:-- 3509k

install for i386

* installing *source* package 'yaqcaffy' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning message:
Package 'simpleaffy' is deprecated and will be removed from
  Bioconductor version 3.13 
Creating a generic function for 'identical' from package 'base' in package 'yaqcaffy'
** help
*** installing help indices
  converting help for package 'yaqcaffy'
    finding HTML links ... done
    YAQCStats-class                         html  
    finding level-2 HTML links ... done

    YaqcControlProbes-class                 html  
    getAllInt                               html  
    getBioProbes                            html  
    getOutliers                             html  
    getQCRatios                             html  
    getRatioProbes                          html  
    getSpikeProbes                          html  
    probeSelectionInterface                 html  
    reprodPlot                              html  
    yaqc.affy                               html  
    yaqc.plot                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'simpleaffy' is deprecated and will be removed from
  Bioconductor version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'simpleaffy' is deprecated and will be removed from
  Bioconductor version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'yaqcaffy' ...
** testing if installed package can be loaded
Warning: Package 'simpleaffy' is deprecated and will be removed from
  Bioconductor version 3.13
* MD5 sums
packaged installation of 'yaqcaffy' as yaqcaffy_1.50.0.zip
* DONE (yaqcaffy)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'yaqcaffy' successfully unpacked and MD5 sums checked