Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

INSTALL report for tscR on tokay1

This page was generated on 2021-05-06 12:34:03 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the tscR package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1906/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tscR 1.2.0  (landing page)
PĂ©rez-Sanz, Fernando
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/tscR
Branch: RELEASE_3_12
Last Commit: c6f7271
Last Changed Date: 2020-10-27 11:53:55 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: tscR
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/tscR_1.2.0.tar.gz && rm -rf tscR.buildbin-libdir && mkdir tscR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tscR.buildbin-libdir tscR_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL tscR_1.2.0.zip && rm tscR_1.2.0.tar.gz tscR_1.2.0.zip
StartedAt: 2021-05-05 17:52:02 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:52:55 -0400 (Wed, 05 May 2021)
EllapsedTime: 52.9 seconds
RetCode: 0
Status:   OK   

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/tscR_1.2.0.tar.gz && rm -rf tscR.buildbin-libdir && mkdir tscR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tscR.buildbin-libdir tscR_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL tscR_1.2.0.zip && rm tscR_1.2.0.tar.gz tscR_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  161k  100  161k    0     0  3351k      0 --:--:-- --:--:-- --:--:-- 3435k

install for i386

* installing *source* package 'tscR' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c tscR.c -o tscR.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c tscR_init.c -o tscR_init.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o tscR.dll tmp.def tscR.o tscR_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/tscR.buildbin-libdir/00LOCK-tscR/00new/tscR/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'tscR'
    finding HTML links ... done
    combineCluster                          html  
    frechetDist                             html  
    frechetDistC                            html  
    getClusters                             html  
    importFromSE                            html  
    imputeSenator-class                     html  
    imputeSenatorToData                     html  
    imputeSenators                          html  
    plotCluster                             html  
    plotClusterSenator                      html  
    slopeDist                               html  
    tscR                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'tscR' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c tscR.c -o tscR.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c tscR_init.c -o tscR_init.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o tscR.dll tmp.def tscR.o tscR_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/tscR.buildbin-libdir/tscR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tscR' as tscR_1.2.0.zip
* DONE (tscR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'tscR' successfully unpacked and MD5 sums checked