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CHECK report for supraHex on malbec1

This page was generated on 2021-05-06 12:29:22 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the supraHex package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1815/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.28.2  (landing page)
Hai Fang
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/supraHex
Branch: RELEASE_3_12
Last Commit: 73c6b44
Last Changed Date: 2021-04-29 02:13:27 -0400 (Thu, 29 Apr 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: supraHex
Version: 1.28.2
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings supraHex_1.28.2.tar.gz
StartedAt: 2021-05-06 06:28:45 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 06:30:14 -0400 (Thu, 06 May 2021)
EllapsedTime: 89.5 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings supraHex_1.28.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/supraHex.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.28.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL supraHex
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.0520.0040.056
sCompReorder3.4560.0323.496
sDistance0.4480.0000.447
sDmat0.5640.0000.566
sDmatCluster0.6000.0000.601
sDmatMinima0.6800.0000.684
sHexDist0.0120.0000.011
sHexGrid0.0080.0000.009
sHexGridVariant0.0000.0040.003
sHexPolygon0.1680.0000.168
sInitial0.0040.0000.007
sMapOverlay0.5840.0040.590
sNeighAny0.0160.0000.016
sNeighDirect0.0120.0000.011
sPipeline0.0000.0000.001
sTopology0.0600.0040.064
sTrainBatch0.0600.0000.061
sTrainSeq0.6440.0000.645
sTrainology0.0120.0000.010
sWriteData0.7960.0080.802
visColoralpha0.0040.0000.006
visColorbar0.0360.0000.039
visColormap0.0080.0000.005
visCompReorder4.5080.0204.533
visDmatCluster000
visDmatHeatmap000
visHeatmap0.1640.0080.171
visHeatmapAdv0.7080.0040.712
visHexAnimate0.0040.0000.002
visHexBarplot1.5320.0201.555
visHexComp0.6360.0000.634
visHexGrid0.6800.0000.681
visHexMapping2.0560.0082.068
visHexMulComp2.1400.0242.171
visHexPattern2.8240.0362.863
visKernels0.0200.0000.019
visTreeBSclust0.0000.0000.001
visTreeBootstrap000
visVp0.0200.0040.025