Gavin Rhys Lloyd
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/structToolbox |
| Branch: RELEASE_3_12 |
| Last Commit: dea6388 |
| Last Changed Date: 2020-10-27 11:53:02 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:51 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the structToolbox package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1809/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| structToolbox 1.2.0 (landing page) Gavin Rhys Lloyd
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: structToolbox |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:structToolbox.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings structToolbox_1.2.0.tar.gz |
| StartedAt: 2021-05-06 07:21:02 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 07:33:22 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 740.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: structToolbox.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:structToolbox.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings structToolbox_1.2.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/structToolbox.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'structToolbox/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'structToolbox' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'structToolbox' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fold_change_int 13.16 0.02 13.17
fisher_exact 6.15 0.01 6.16
forward_selection_by_rank 5.11 0.17 5.29
fs_line 5.15 0.03 5.18
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fold_change_int 12.61 0.00 12.61
fisher_exact 7.28 0.00 7.28
forward_selection_by_rank 5.80 0.03 5.82
fs_line 5.58 0.05 5.63
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
structToolbox.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/structToolbox_1.2.0.tar.gz && rm -rf structToolbox.buildbin-libdir && mkdir structToolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=structToolbox.buildbin-libdir structToolbox_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL structToolbox_1.2.0.zip && rm structToolbox_1.2.0.tar.gz structToolbox_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
13 2766k 13 381k 0 0 14.7M 0 --:--:-- --:--:-- --:--:-- 14.9M
100 2766k 100 2766k 0 0 45.4M 0 --:--:-- --:--:-- --:--:-- 45.7M
install for i386
* installing *source* package 'structToolbox' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'structToolbox'
finding HTML links ... done
ANOVA html
AUC html
DFA html
DatasetExperiment_boxplot html
DatasetExperiment_dist html
DatasetExperiment_factor_boxplot html
DatasetExperiment_heatmap html
HCA html
HSD html
HSDEM html
MTBLS79_DatasetExperiment html
PCA html
PLSDA html
PLSR html
SVM html
as_data_frame html
autoscale html
balanced_accuracy html
blank_filter html
blank_filter_hist html
bootstrap html
calculate html
chart_plot html
classical_lsq html
compare_dist html
confounders_clsq html
confounders_lsq_barchart html
confounders_lsq_boxplot html
constant_sum_norm html
corr_coef html
dfa_scores_plot html
dratio_filter html
feature_boxplot html
feature_profile html
filter_by_name html
filter_na_count html
filter_smeta html
fisher_exact html
fold_change html
fold_change_int html
fold_change_plot html
forward_selection_by_rank html
fs_line html
glog_opt_plot html
glog_transform html
grid_search_1d html
gs_line html
hca_dendrogram html
kfold_xval html
kfoldxcv_grid html
kfoldxcv_metric html
knn_impute html
kw_p_hist html
kw_rank_sum html
linear_model html
log_transform html
mean_centre html
mean_of_medians html
mixed_effect html
model_apply html
model_predict html
model_reverse html
model_train html
mv_boxplot html
mv_feature_filter html
mv_feature_filter_hist html
mv_histogram html
mv_sample_filter html
mv_sample_filter_hist html
nroot_transform html
pairs_filter html
pareto_scale html
pca_biplot html
pca_correlation_plot html
pca_dstat_plot html
pca_loadings_plot html
pca_scores_plot html
pca_scree_plot html
permutation_test html
permutation_test_plot html
permute_sample_order html
plsda_predicted_plot html
plsda_regcoeff_plot html
plsda_roc_plot html
plsda_scores_plot html
plsda_vip_plot html
plsr_cook_dist html
plsr_prediction_plot html
plsr_qq_plot html
plsr_residual_hist html
pqn_norm html
pqn_norm_hist html
prop_na html
r_squared html
rsd_filter html
rsd_filter_hist html
run html
sb_corr html
split_data html
stratified_split html
structToolbox html
svm_plot_2d html
tSNE html
tSNE_scatter html
ttest html
vec_norm html
wilcox_p_hist html
wilcox_test html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'structToolbox' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'structToolbox' as structToolbox_1.2.0.zip
* DONE (structToolbox)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'structToolbox' successfully unpacked and MD5 sums checked
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structToolbox.Rcheck/tests_i386/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ggplot2)
> library(structToolbox)
Loading required package: struct
>
> test_check("structToolbox")
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 95 ]
>
> proc.time()
user system elapsed
138.04 1.54 139.57
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structToolbox.Rcheck/tests_x64/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ggplot2)
> library(structToolbox)
Loading required package: struct
>
> test_check("structToolbox")
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 95 ]
>
> proc.time()
user system elapsed
168.17 0.65 168.81
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structToolbox.Rcheck/examples_i386/structToolbox-Ex.timings
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structToolbox.Rcheck/examples_x64/structToolbox-Ex.timings
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