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INSTALL report for sigaR on tokay1

This page was generated on 2021-05-06 12:33:36 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the sigaR package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1700/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sigaR 1.38.0  (landing page)
Wessel N. van Wieringen
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/sigaR
Branch: RELEASE_3_12
Last Commit: 53c648b
Last Changed Date: 2020-10-27 10:44:08 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    ERROR  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: sigaR
Version: 1.38.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/sigaR_1.38.0.tar.gz && rm -rf sigaR.buildbin-libdir && mkdir sigaR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sigaR.buildbin-libdir sigaR_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL sigaR_1.38.0.zip && rm sigaR_1.38.0.tar.gz sigaR_1.38.0.zip
StartedAt: 2021-05-05 17:19:53 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:21:13 -0400 (Wed, 05 May 2021)
EllapsedTime: 80.1 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/sigaR_1.38.0.tar.gz && rm -rf sigaR.buildbin-libdir && mkdir sigaR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sigaR.buildbin-libdir sigaR_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL sigaR_1.38.0.zip && rm sigaR_1.38.0.tar.gz sigaR_1.38.0.zip
###
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install for i386

* installing *source* package 'sigaR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sigaR'
    finding HTML links ... done
    CNGEheatmaps                            html  
    ExpressionSet2order                     html  
    finding level-2 HTML links ... done

    ExpressionSet2subset                    html  
    ExpressionSet2weightedSubset            html  
    RCMestimation                           html  
    RCMrandom-method                        html  
    RCMrandom                               html  
    RCMtest                                 html  
    cghCall2cghSeg                          html  
    cghCall2maximumSubset                   html  
    cghCall2order                           html  
    cghCall2subset                          html  
    cghCall2weightedSubset                  html  
    cghSeg2order                            html  
    cghSeg2subset                           html  
    cghSeg2weightedSubset                   html  
    cisEffectPlot                           html  
    cisEffectTable                          html  
    cisEffectTest                           html  
    cisEffectTune                           html  
    cisTest-class                           html  
    entTest-class                           html  
    entropyTest                             html  
    expandMatching2singleIDs                html  
    getSegFeatures                          html  
    hdEntropy                               html  
    hdMI                                    html  
    matchAnn2Ann                            html  
    matchCGHcall2ExpressionSet              html  
    merge2ExpressionSets                    html  
    merge2cghCalls                          html  
    miTest-class                            html  
    mutInfTest                              html  
    nBreakpoints                            html  
    pathway1sample                          html  
    pathway2sample                          html  
    pathwayFit-class                        html  
    pathwayPlot                             html  
    pollackCN16                             html  
    pollackGE16                             html  
    profilesPlot                            html  
    rcmFit-class                            html  
    rcmTest-class                           html  
    sigaR-package                           html  
    splitMatchingAtBreakpoints              html  
    summary-method                          html  
    uniqGenomicInfo                         html  
    z.RCMloss-method                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'sigaR' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'sigaR' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sigaR' ...
** testing if installed package can be loaded
Warning: Package 'sigaR' is deprecated and will be removed from Bioconductor
  version 3.13
* MD5 sums
packaged installation of 'sigaR' as sigaR_1.38.0.zip
* DONE (sigaR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'sigaR' successfully unpacked and MD5 sums checked