Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

BUILD report for samExploreR on malbec1

This page was generated on 2021-05-06 12:28:58 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the samExploreR package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1613/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
samExploreR 1.14.0  (landing page)
shailesh tripathi
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/samExploreR
Branch: RELEASE_3_12
Last Commit: 0f68474
Last Changed Date: 2020-10-27 11:20:27 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    ERROR  skipped
tokay1Windows Server 2012 R2 Standard / x64... NOT SUPPORTED ...
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: samExploreR
Version: 1.14.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data samExploreR
StartedAt: 2021-05-05 21:38:57 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 21:39:11 -0400 (Wed, 05 May 2021)
EllapsedTime: 13.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data samExploreR
###
##############################################################################
##############################################################################


* checking for file ‘samExploreR/DESCRIPTION’ ... OK
* preparing ‘samExploreR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Manual.Rnw’ using Sweave
Loading required package: ggplot2
Loading required package: Rsubread
Loading required package: RNAseqData.HNRNPC.bam.chr14
Loading required package: edgeR
Loading required package: limma
Simulated Depth: 80%
Number of sub samples: 1

Error: processing vignette 'Manual.Rnw' failed with diagnostics:
 chunk 5 (label = Run-samExplore) 
Error in .stop_quietly() : 

--- failed re-building ‘Manual.Rnw’

SUMMARY: processing the following file failed:
  ‘Manual.Rnw’

Error: Vignette re-building failed.
Execution halted