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INSTALL report for regioneR on tokay1

This page was generated on 2021-05-06 12:33:10 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the regioneR package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1497/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
regioneR 1.22.0  (landing page)
Bernat Gel
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/regioneR
Branch: RELEASE_3_12
Last Commit: fb28e1a
Last Changed Date: 2020-10-27 11:04:09 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: regioneR
Version: 1.22.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/regioneR_1.22.0.tar.gz && rm -rf regioneR.buildbin-libdir && mkdir regioneR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regioneR.buildbin-libdir regioneR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL regioneR_1.22.0.zip && rm regioneR_1.22.0.tar.gz regioneR_1.22.0.zip
StartedAt: 2021-05-05 17:59:31 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:00:41 -0400 (Wed, 05 May 2021)
EllapsedTime: 70.0 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/regioneR_1.22.0.tar.gz && rm -rf regioneR.buildbin-libdir && mkdir regioneR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regioneR.buildbin-libdir regioneR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL regioneR_1.22.0.zip && rm regioneR_1.22.0.tar.gz regioneR_1.22.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  992k  100  992k    0     0  35.6M      0 --:--:-- --:--:-- --:--:-- 37.2M

install for i386

* installing *source* package 'regioneR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'regioneR'
    finding HTML links ... done
    characterToBSGenome                     html  
    finding level-2 HTML links ... done

    circularRandomizeRegions                html  
    commonRegions                           html  
    createFunctionsList                     html  
    createRandomRegions                     html  
    emptyCacheRegioneR                      html  
    extendRegions                           html  
    filterChromosomes                       html  
    getChromosomesByOrganism                html  
    getGenome                               html  
    getGenomeAndMask                        html  
    getMask                                 html  
    joinRegions                             html  
    listChrTypes                            html  
    localZScore                             html  
    maskFromBSGenome                        html  
    meanDistance                            html  
    meanInRegions                           html  
    mergeRegions                            html  
    numOverlaps                             html  
    overlapGraphicalSummary                 html  
    overlapPermTest                         html  
    overlapRegions                          html  
    permTest                                html  
    plot.localZScoreResults                 html  
    plot.localZScoreResultsList             html  
    plot.permTestResults                    html  
    plot.permTestResultsList                html  
    plotRegions                             html  
    print.permTestResults                   html  
    randomizeRegions                        html  
    recomputePermTest                       html  
    resampleRegions                         html  
    splitRegions                            html  
    subtractRegions                         html  
    summary.permTestResults                 html  
    summary.permTestResultsList             html  
    toDataframe                             html  
    toGRanges                               html  
    uniqueRegions                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'regioneR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'regioneR' as regioneR_1.22.0.zip
* DONE (regioneR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'regioneR' successfully unpacked and MD5 sums checked