##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:pqsfinder.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings pqsfinder_2.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/pqsfinder.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pqsfinder/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pqsfinder’ version ‘2.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pqsfinder’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.9Mb
  sub-directories of 1Mb or more:
    lib   9.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Versioned 'LinkingTo' value for ‘BH’ is only usable in R >= 3.0.2
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/Users/biocbuild/bbs-3.12-bioc/meat/pqsfinder.Rcheck/00check.log’
for details.

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##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL pqsfinder
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘pqsfinder’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c pqsfinder.cpp -o pqsfinder.o
In file included from pqsfinder.cpp:13:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
In file included from pqsfinder.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
                                                                        ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   return regex_search(first, last, m, e, flags, first);
          ^
pqsfinder.cpp:298:19: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
    return boost::regex_search(start, end, boost_m, run_re_c, boost::match_default);
                  ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/cregex.cpp -o boost_regex/cregex.o
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_match.hpp:49:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const char *, std::__1::allocator<boost::sub_match<const char *> >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, first);
                                                                        ^
boost_regex/cregex.cpp:208:7: note: in instantiation of function template specialization 'boost::regex_match<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   if(regex_match(p, end, pdata->m, pdata->e, flags))
      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_grep.hpp:53:84: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, match_allocator_type, traits> matcher(first, last, m, e, flags, first);
                                                                                   ^
boost_regex/cregex.cpp:409:15: note: in instantiation of function template specialization 'boost::regex_grep<boost::re_detail_107500::pred4, boost::re_detail_107500::mapfile_iterator, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
      int r = regex_grep(pred, map.begin(), map.end(), pdata->e, flags);
              ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
                                                                        ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   return regex_search(first, last, m, e, flags, first);
          ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_iterator.hpp:58:14: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
      return regex_search(first, end, what, re, flags);
             ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_iterator.hpp:109:18: note: in instantiation of member function 'boost::regex_iterator_implementation<std::__1::__wrap_iter<const char *>, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::init' requested here
      if(!pdata->init(a))
                 ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_replace.hpp:46:57: note: in instantiation of member function 'boost::regex_iterator<std::__1::__wrap_iter<const char *>, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::regex_iterator' requested here
   regex_iterator<BidirectionalIterator, charT, traits> i(first, last, e, flags);
                                                        ^
boost_regex/cregex.cpp:461:4: note: in instantiation of function template specialization 'boost::regex_replace<boost::re_detail_107500::string_out_iterator<std::__1::basic_string<char> >, std::__1::__wrap_iter<const char *>, boost::regex_traits<char, boost::cpp_regex_traits<char> >, char, const char *>' requested here
   regex_replace(i, in.begin(), in.end(), pdata->e, fmt.c_str(), flags);
   ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
3 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/icu.cpp -o boost_regex/icu.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/instances.cpp -o boost_regex/instances.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
In file included from boost_regex/posix_api.cpp:23:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const char *, std::__1::allocator<boost::sub_match<const char *> >, boost::c_regex_traits<char> >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
                                                                        ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::c_regex_traits<char> >' requested here
   return regex_search(first, last, m, e, flags, first);
          ^
boost_regex/posix_api.cpp:248:16: note: in instantiation of function template specialization 'boost::regex_search<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::c_regex_traits<char> >' requested here
      result = regex_search(start, end, m, *static_cast<c_regex_type*>(expression->guts), flags);
               ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/regex.cpp -o boost_regex/regex.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
In file included from boost_regex/wide_posix_api.cpp:25:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, boost::c_regex_traits<wchar_t> >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
                                                                        ^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, wchar_t, boost::c_regex_traits<wchar_t> >' requested here
   return regex_search(first, last, m, e, flags, first);
          ^
boost_regex/wide_posix_api.cpp:264:16: note: in instantiation of function template specialization 'boost::regex_search<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, wchar_t, boost::c_regex_traits<wchar_t> >' requested here
      result = regex_search(start, end, m, *static_cast<wc_regex_type*>(expression->guts), flags);
               ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib"
ar rs "/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
ar: creating archive /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(icu.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(instances.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(regex_debug.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(usinstances.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(w32_regex_traits.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(winstances.o) has no symbols
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pqsfinder.so RcppExports.o pqsfinder.o /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pqsfinder)

R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(pqsfinder)
Loading required package: Biostrings
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

> 
> test_check("pqsfinder")
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
 compare pqsfinder_1_4_4_d, pqsfinder_1_4_4_r
 run default pqsfinder
Searching on sense strand...
Search status: finished              
 run pqsfinder using boost regex engine
Searching on sense strand...
Search status: finished              
 compare pv_d, pv_r
 compare pv_d, pqsfinder_1_4_4_d
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: 30% ETTC 00:00:00
Search status: 43% ETTC 00:00:01
Search status: 46% ETTC 00:00:01
Search status: 47% ETTC 00:00:02
Search status: 48% ETTC 00:00:03
Search status: 49% ETTC 00:00:04
Search status: 55% ETTC 00:00:04
Search status: 59% ETTC 00:00:03
Search status: 78% ETTC 00:00:01
Search status: 99% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: 23% ETTC 00:00:00
Search status: 42% ETTC 00:00:00
Search status: 46% ETTC 00:00:01
Search status: 51% ETTC 00:00:01
Search status: 57% ETTC 00:00:02
Search status: 83% ETTC 00:00:00
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: 27% ETTC 00:00:00
Search status: 91% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: 41% ETTC 00:00:00
Search status: 93% ETTC 00:00:00
Search status: finished              
Searching on sense strand...
Search status: 27% ETTC 00:00:00
Search status: 91% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: 41% ETTC 00:00:00
Search status: 93% ETTC 00:00:00
Search status: finished              
Searching on sense strand...
Search status: 44% ETTC 00:00:00
Search status: 96% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: 42% ETTC 00:00:00
Search status: 86% ETTC 00:00:00
Search status: finished              
Searching on sense strand...
Search status: 44% ETTC 00:00:00
Search status: 96% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: 42% ETTC 00:00:00
Search status: 86% ETTC 00:00:00
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: 3% ETTC 00:00:32
Search status: 6% ETTC 00:00:31
Search status: 9% ETTC 00:00:30
Search status: 12% ETTC 00:00:29
Search status: 14% ETTC 00:00:49
Search status: 18% ETTC 00:00:41
Search status: 21% ETTC 00:00:37
Search status: 22% ETTC 00:00:42
Search status: 22% ETTC 00:00:49
Search status: 24% ETTC 00:00:47
Search status: 26% ETTC 00:00:45
Search status: 28% ETTC 00:00:46
Search status: 30% ETTC 00:00:44
Search status: 31% ETTC 00:00:46
Search status: 32% ETTC 00:00:46
Search status: 34% ETTC 00:00:46
Search status: 38% ETTC 00:00:40
Search status: 40% ETTC 00:00:39
Search status: 41% ETTC 00:00:38
Search status: 44% ETTC 00:00:35
Search status: 46% ETTC 00:00:34
Search status: 48% ETTC 00:00:32
Search status: 49% ETTC 00:00:32
Search status: 53% ETTC 00:00:28
Search status: 56% ETTC 00:00:25
Search status: 59% ETTC 00:00:23
Search status: 61% ETTC 00:00:22
Search status: 62% ETTC 00:00:22
Search status: 64% ETTC 00:00:20
Search status: 65% ETTC 00:00:20
Search status: 67% ETTC 00:00:19
Search status: 69% ETTC 00:00:18
Search status: 71% ETTC 00:00:17
Search status: 74% ETTC 00:00:15
Search status: 75% ETTC 00:00:14
Search status: 79% ETTC 00:00:11
Search status: 81% ETTC 00:00:11
Search status: 82% ETTC 00:00:10
Search status: 88% ETTC 00:00:06
Search status: 90% ETTC 00:00:05
Search status: 92% ETTC 00:00:04
Search status: 93% ETTC 00:00:03
Search status: 96% ETTC 00:00:02
Search status: 97% ETTC 00:00:01
Search status: 99% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: 92% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: 49% ETTC 00:00:01
Search status: 93% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: 74% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: 98% ETTC 00:00:00
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
Searching on sense strand...
Search status: finished              
Searching on antisense strand...
Search status: finished              
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 83 ]
> 
> proc.time()
   user  system elapsed 
 94.864   0.655  99.069